Factsheet for TraesCS1B01G140100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G121600.1	Wheat	plastid	87.26	95.53
TraesCS1A01G120800.1	Wheat	plastid	85.1	93.16
HORVU1Hr1G027550.1	Barley	plastid	86.78	87.2
Os05t0182100-01	Rice	plastid	63.22	66.41
OQU77561	Sorghum	plastid	51.44	62.03
Zm00001d037616_P001	Maize	plastid	54.09	60.65
PGSC0003DMT400080145	Potato	cytosol	19.47	60.45
VIT_07s0031g01760.t01	Wine grape	cytosol	30.29	50.0
PGSC0003DMT400080166	Potato	plastid	35.1	42.32
Solyc04g051660.2.1	Tomato	plastid	33.89	40.87
GSMUA_Achr6P00760_001	Banana	plastid	34.86	40.62
CDY53183	Canola	plastid	30.77	37.32
CDX72699	Canola	plastid	30.53	37.03
Bra033620.1-P	Field mustard	plastid	30.29	36.73
AT4G39470.1	Thale cress	plastid	29.81	36.36
KRH53808	Soybean	plastid	31.01	36.24
KRH64138	Soybean	plastid	30.29	35.39

Protein Annotations

EnsemblPlants:TraesCS1B01G140100.1	EnsemblPlantsGene:TraesCS1B01G140100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR26312
PANTHER:PTHR26312:SF67	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr1B:-:185222395..185224535

Molecular Weight (calculated)

47514.7 Da

IEP (calculated)

4.662

GRAVY (calculated)

-0.455

Length

416 amino acids

Sequence
(BLAST)

001: MDIFLLWNMR LKCPTREVVC HCNPPVLFFL VVATAPAMAM SFLSTASTSF VPFRRLSRHK PTVTPSLQFP TNRRRSPSCS LLPPQRRRLS SSKAPTTNLL
101: SSITAASRTL LYLLVASILS LSGVRRPLPS LAAPPPPTQQ PQDDTKGQQE EPDQGDQEEE DEAEWFRKEE EEVDAAWMQP SDEEEEEEDD DEVQMYLEVL
201: SEDPGDVDAL KCVLFARMRR KDWGGALRYV AQLREAEPGE VEWRLMEALL HELNGDIATA ERLFQEVLAE KPLLVRALHG LALCMHKRLE GPTVFEMLEK
301: ALQLAVSEER VPEERNIKLL IAQMHVVKGD LDVASEKLRT LINEDPRDFR PHLCQGIVYA LLDKKEEADE QFDVYRSLVP DEFPDKSFIN DVILSAKEES
401: KDRLQKDFRS EYLSKK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.