Factsheet for Solyc04g051660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080145	Potato	cytosol	37.97	97.76
PGSC0003DMT400080166	Potato	plastid	95.65	95.65
VIT_07s0031g01760.t01	Wine grape	cytosol	48.12	65.87
KRH64138	Soybean	plastid	49.57	48.03
CDX72699	Canola	plastid	47.25	47.52
CDY53183	Canola	plastid	46.67	46.94
Bra033620.1-P	Field mustard	plastid	46.09	46.36
KRH53808	Soybean	plastid	47.83	46.35
AT4G39470.1	Thale cress	plastid	45.51	46.04
GSMUA_Achr6P00760_001	Banana	plastid	44.93	43.42
OQU77561	Sorghum	plastid	38.55	38.55
TraesCS1D01G121600.1	Wheat	plastid	41.16	37.37
TraesCS1A01G120800.1	Wheat	plastid	40.29	36.58
Zm00001d037616_P001	Maize	plastid	38.55	35.85
Os05t0182100-01	Rice	plastid	40.58	35.35
TraesCS1B01G140100.1	Wheat	plastid	40.87	33.89
HORVU1Hr1G027550.1	Barley	plastid	40.58	33.82
Solyc01g008160.2.1	Tomato	plastid	26.09	28.12
Solyc09g005740.1.1	Tomato	plastid	25.8	25.14
Solyc10g085900.1.1	Tomato	plastid	20.0	22.55

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4BSC5	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc04g051660.2	EnsemblPlants:Solyc04g051660.2.1
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000276718B	:	:

Description

No Description!

Coordinates

chr4:-:50948359..50952752

Molecular Weight (calculated)

39624.0 Da

IEP (calculated)

9.924

GRAVY (calculated)

-0.268

Length

345 amino acids

Sequence
(BLAST)

001: MVSSIVTKIP LCLHSSTLNH NSNVVQPISL KTLFLTPLYS PKTLNTLYPK LQAPSKSQNS AILTCSWKPQ KGISKFFSEK IVVLLVGSFL FMGIRAKRVL
101: SLPQPVQGSS VVETQEGDSE EEVMCMKLLE KNPRDVDALK TIVNVKMRKG KTKEALKYVE KLIKVQPREM EWRLLEALCY EMMGQLSKAK RLFKEILKQK
201: PLLLRALHGL AMVMHKNVEG PAVFEMLNGA LEVARQEKRV NEERNIKILV AQMYVVKGEL EEALQKFKLL VQENPRDFRP YLCQGIVYSL LDKKKEADEQ
301: FEIYRSLVPK EFPQRGFLDD VVLAAKTETR EQLEKEFKNE FSYKT

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.