CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64138	Soybean	plastid	89.61	89.61
VIT_07s0031g01760.t01	Wine grape	cytosol	47.19	66.67
PGSC0003DMT400080145	Potato	cytosol	24.16	64.18
PGSC0003DMT400080166	Potato	plastid	46.63	48.12
Solyc04g051660.2.1	Tomato	plastid	46.35	47.83
CDY53183	Canola	plastid	45.79	47.52
Bra033620.1-P	Field mustard	plastid	45.22	46.94
CDX72699	Canola	plastid	44.94	46.65
AT4G39470.1	Thale cress	plastid	44.66	46.63
GSMUA_Achr6P00760_001	Banana	plastid	42.13	42.02
OQU77561	Sorghum	plastid	37.36	38.55
Zm00001d037616_P001	Maize	plastid	36.8	35.31
KRH57052	Soybean	cytosol	21.07	34.25
TraesCS1D01G121600.1	Wheat	plastid	36.52	34.21
TraesCS1A01G120800.1	Wheat	plastid	36.24	33.95
Os05t0182100-01	Rice	plastid	37.64	33.84
HORVU1Hr1G027550.1	Barley	plastid	37.08	31.88
TraesCS1B01G140100.1	Wheat	plastid	36.24	31.01
KRH07405	Soybean	cytosol	13.76	30.06
KRG95856	Soybean	plastid	28.93	29.34
KRH58553	Soybean	plastid	22.47	27.78
KRH42448	Soybean	mitochondrion, plastid	22.75	27.65
KRH19745	Soybean	plastid	25.28	27.36
KRH67571	Soybean	plastid	25.0	27.13

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100798720	MapMan:35.1	EMBL:ACUP02003486	EnsemblPlantsGene:GLYMA_06G147400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1KBC8	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
ProteinID:KRH53807.1	EnsemblPlants:KRH53808	ProteinID:KRH53808	ProteinID:KRH53808.1	PFAM:PF14559	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000233A166	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:12008394..12012572

Molecular Weight (calculated)

40659.1 Da

IEP (calculated)

8.839

GRAVY (calculated)

-0.388

Length

356 amino acids

Sequence
(BLAST)

001: MASTSITTLS IYSHSQPKFL NLLQHPLIHT RNKSTSITFK PAIVRATLFS TLTCSHTPST PSSNLPPGRA LTKFLSEKVA FFLIGSFLLS GCFSKRPAFA
101: ETAPSVGSGA VLEEKMNPTE EKNEEEKSEE EVEEMWEGIL EKDPKNVEAL KVVLYGKIRR GKSKEAVKVV EDLIAAEPNE VEWRLLLALC YETMGQLSKA
201: KRLFREILKK RPLLVRALHG LAMAMHKIHE GPAVFEMLNN AQELASRENR VTEERNIRIL IAQMHVVQGN LEEGLKRFQE LIDQNRRDFR PYICQGIIYS
301: LLGKNEEAAQ QFETYQTLVP EEFPQRRFLD DVAIAAKRSS LEQFKKEFRD QFSYRK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.