Factsheet for GSMUA_Achr6P00760_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080145	Potato	cytosol	22.69	60.45
VIT_07s0031g01760.t01	Wine grape	cytosol	40.06	56.75
PGSC0003DMT400080166	Potato	plastid	43.7	45.22
Solyc04g051660.2.1	Tomato	plastid	43.42	44.93
CDX72699	Canola	plastid	41.18	42.86
CDY53183	Canola	plastid	41.18	42.86
KRH53808	Soybean	plastid	42.02	42.13
Bra033620.1-P	Field mustard	plastid	40.34	41.98
KRH64138	Soybean	plastid	41.74	41.85
AT4G39470.1	Thale cress	plastid	39.5	41.35
OQU77561	Sorghum	plastid	36.69	37.97
TraesCS1D01G121600.1	Wheat	plastid	40.34	37.89
TraesCS1A01G120800.1	Wheat	plastid	40.34	37.89
Os05t0182100-01	Rice	plastid	40.9	36.87
Zm00001d037616_P001	Maize	plastid	36.41	35.04
HORVU1Hr1G027550.1	Barley	plastid	40.62	35.02
TraesCS1B01G140100.1	Wheat	plastid	40.62	34.86
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	28.57	29.48

Protein Annotations

EnsemblPlants:GSMUA_Achr6P00760_001	EnsemblPlants:GSMUA_Achr6T00760_001	EnsemblPlantsGene:GSMUA_Achr6G00760_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	PFAM:PF14559	PFscan:PS50293	SEG:seg
SMART:SM00028	SUPFAM:SSF48452	UniParc:UPI0002949559	UniProt:M0T324	MapMan:35.1	:

Description

Putative TPR repeat-containing protein MJ1345 [Source:GMGC_GENE;Acc:GSMUA_Achr6G00760_001]

Coordinates

chr6:-:527980..537398

Molecular Weight (calculated)

40385.3 Da

IEP (calculated)

9.625

GRAVY (calculated)

-0.288

Length

357 amino acids

Sequence
(BLAST)

001: MASLHSAILS ALQFHQRPSN LGLRIDSTRI LTSTIAPPRL LQPFPLSTKT LASDRLVPHL PKILCSRTPQ IPPLSRRNAN FLRRIAGGAA VLLIGSLVFL
101: GRLGTRSALA LDGAQRSNFS APLEEKIDAS GEDEVEMYAR VLQKNPKDVE ALKVVLYGKL KKGKREEAVR LVERLIELEP DDVEWRLLQG LCYELMGKLD
201: KAKRLFKDIL KERPLLIRAL HGLALAMHKS RESATAFEML HKALDLARRE NRVTDQRNIK ILIAQMHAIV GDLEGASQHF QDLVNEDPRD FRPYLCQGVI
301: YSLLDKTKEA DEQFEIYRSL LPDEFPQRSF IDDVILTAKT EAKQLGKELE SEYSPRK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.