Factsheet for Zm00001d037616_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77561	Sorghum	plastid	77.09	82.9
Os05t0182100-01	Rice	plastid	65.77	61.62
TraesCS1D01G121600.1	Wheat	plastid	61.73	60.26
TraesCS1A01G120800.1	Wheat	plastid	61.73	60.26
PGSC0003DMT400080145	Potato	cytosol	21.29	58.96
HORVU1Hr1G027550.1	Barley	plastid	61.19	54.83
TraesCS1B01G140100.1	Wheat	plastid	60.65	54.09
VIT_07s0031g01760.t01	Wine grape	cytosol	32.61	48.02
PGSC0003DMT400080166	Potato	plastid	36.39	39.13
Solyc04g051660.2.1	Tomato	plastid	35.85	38.55
KRH64138	Soybean	plastid	35.31	36.8
KRH53808	Soybean	plastid	35.31	36.8
GSMUA_Achr6P00760_001	Banana	plastid	35.04	36.41
CDY53183	Canola	plastid	31.81	34.4
AT4G39470.1	Thale cress	plastid	31.54	34.31
CDX72699	Canola	plastid	31.0	33.53
Bra033620.1-P	Field mustard	plastid	31.0	33.53

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100193041	MapMan:35.1	ProteinID:AQK84465.1	UniProt:B4FDK7	EMBL:BT035195
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00017B6865	EnsemblPlantsGene:Zm00001d037616	EnsemblPlants:Zm00001d037616_P001	EnsemblPlants:Zm00001d037616_T001	SEG:seg	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr6:-:131895109..131897519

Molecular Weight (calculated)

41776.0 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.393

Length

371 amino acids

Sequence
(BLAST)

001: MAMSFFSPTT TPSSSASLLP IRRQCATGPS VSFPLKPHRF RVHLKPPRSS RTRIHTLSTS SLKIPTESIL SSVVSTSTTL LFVLVAGLLS LSGVRSLPAL
101: ACAPAPTQQP QETEEQESKE KKQQEEAGER KEDVLPQLDE EDAEDDEVRM YSAILSRNSG DVDALKCALY AKMRRADWGG ALRFARLLRD AEPSELEWRL
201: MVAQLHELKG DLAEAERHFR ELLAEEPLLV RALHGLALCM QKKPEGPAVF EMLENALQLA TSERRVPEER NIKLLIAQMH VVMGQLDVAS EKLQNLINED
301: PRDFRSHLCQ GIVYALLDRK EDADMQFDVY RSLVPDEFPD KSFISDVILA ARTESHDRLQ KEFDSEFQAK K

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.