CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037616_P001	Maize	plastid	82.9	77.09
PGSC0003DMT400080145	Potato	cytosol	22.9	58.96
Os05t0182100-01	Rice	plastid	66.96	58.33
TraesCS1A01G120800.1	Wheat	plastid	62.32	56.58
TraesCS1D01G121600.1	Wheat	plastid	62.03	56.32
HORVU1Hr1G027550.1	Barley	plastid	62.9	52.42
TraesCS1B01G140100.1	Wheat	plastid	62.03	51.44
VIT_07s0031g01760.t01	Wine grape	cytosol	35.94	49.21
PGSC0003DMT400080166	Potato	plastid	39.42	39.42
Solyc04g051660.2.1	Tomato	plastid	38.55	38.55
KRH53808	Soybean	plastid	38.55	37.36
KRH64138	Soybean	plastid	38.26	37.08
GSMUA_Achr6P00760_001	Banana	plastid	37.97	36.69
AT4G39470.1	Thale cress	plastid	35.07	35.48
CDY53183	Canola	plastid	34.78	34.99
CDX72699	Canola	plastid	33.91	34.11
Bra033620.1-P	Field mustard	plastid	33.91	34.11

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8080972	UniProt:C5YU77	ncoils:Coil	ProteinID:EES17821.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	EnsemblPlants:OQU77561
ProteinID:OQU77561	ProteinID:OQU77561.1	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	EnsemblPlantsGene:SORBI_3009G068300
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8893D	RefSeq:XP_002439391.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:7482689..7486364

Molecular Weight (calculated)

38814.7 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.316

Length

345 amino acids

Sequence
(BLAST)

001: MATSFLLPTT TASASASLLL IHRQRATGPS LSFRLKPHRS RVHLKPPRSS RIPSLPTSSL KTPTESVLSS VVSTSRTLLF VLVAGLLSLS GVRSHPALAY
101: APAPTQQLQE IEEQDEQQDE EVRMYSAILS RSPGDVDALK GALYAKMRRA DWGGALRYAR RLRDAEPSEV EWRLMVAQLN ELKGDLAEAE CQFRELLAQE
201: PLLVQALHGL ALCMQKKLEG PTVFEMLENA LQLATSEKRV PEERNIKLLI AQMHVVMGQL DVASEKLQNL INEDPRDFRS HLCQGIVYAL LDRKEDADKQ
301: FDIYRSLVPD EFPDKSFISD VILAARMESH DRLQKEFESE FQTKK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.