CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53183	Canola	plastid	94.75	94.75
AT4G39470.1	Thale cress	plastid	81.05	81.52
PGSC0003DMT400080145	Potato	cytosol	25.36	64.93
VIT_07s0031g01760.t01	Wine grape	cytosol	43.44	59.13
PGSC0003DMT400080166	Potato	plastid	48.1	47.83
Solyc04g051660.2.1	Tomato	plastid	47.52	47.25
KRH64138	Soybean	plastid	46.94	45.22
KRH53808	Soybean	plastid	46.65	44.94
GSMUA_Achr6P00760_001	Banana	plastid	42.86	41.18
CDX95523	Canola	cytosol	7.87	34.18
OQU77561	Sorghum	plastid	34.11	33.91
TraesCS1A01G120800.1	Wheat	plastid	37.03	33.42
TraesCS1D01G121600.1	Wheat	plastid	37.03	33.42
Os05t0182100-01	Rice	plastid	37.03	32.07
Zm00001d037616_P001	Maize	plastid	33.53	31.0
TraesCS1B01G140100.1	Wheat	plastid	37.03	30.53
CDY53407	Canola	cytosol, nucleus, plastid	14.58	30.3
HORVU1Hr1G027550.1	Barley	plastid	36.15	29.95
CDY46775	Canola	plastid	27.41	28.48
CDX93382	Canola	plastid	26.82	28.13
CDX80831	Canola	cytosol, plastid	25.36	27.8
CDY11220	Canola	plastid	25.07	27.48
CDY54811	Canola	plastid	25.36	27.27
CDX92326	Canola	plastid	25.36	27.27
CDY18448	Canola	plastid	25.36	26.69
CDX92236	Canola	plastid	24.49	26.33
CDX78187	Canola	plastid	24.2	25.94
CDX73544	Canola	plastid	16.04	21.74
CDY53406	Canola	plasma membrane	6.71	10.09

Protein Annotations

EnsemblPlants:CDX72699	EnsemblPlantsGene:GSBRNA2T00100287001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	PFscan:PS50005	PFscan:PS50293	ProteinID:CDX72699	ProteinID:CDX72699.1
SUPFAM:SSF48452	UniParc:UPI0004EF0BCB	MapMan:35.1	:	:	:

Description

BnaC07g47210D

Coordinates

chrLK031796:+:2704787..2706312

Molecular Weight (calculated)

39197.4 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.418

Length

343 amino acids

Sequence
(BLAST)

001: MSSIGVSALS SPAKFHRRRE KAQTFTPTHF LNPNGFQSPW RKTRPLAPKL SQSLNFASPS SHLPLIRSST PPSSKDFVQI LARKAAIFIV GSFVFLGLCS
101: SKPALSLPTA TASSQSELED EEMFEKVLES EPENMEAMKA VLYKKMRRGK PEDAVKYVEK LIKLEPREVE WKLLEALCYE TMEQLSKAKR LFKDILRDNP
201: LLIRALHGLA MVMHKSHDSS VFDMLNEAME VARQGNRVTE ERNIQVLIGQ MHIVKGQFEE ALKIFQQMVN DNPRDFRPYL CQGIVYSLMD KKEEADQQFE
301: IYWSLVPEEF PQKGFLDDVA LAAQAKSRER LQNTFKAKFT HGK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.