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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78187 Canola plastid 77.08 60.94
CDX95523 Canola cytosol 11.46 36.71
CDY18448 Canola plastid 43.08 33.44
CDY46775 Canola plastid 42.29 32.42
CDX93382 Canola plastid 41.5 32.11
AT3G53560.2 Thale cress plastid 48.62 31.7
KRG95856 Soybean plastid 40.32 29.06
CDY11220 Canola plastid 34.39 27.8
KRH67571 Soybean plastid 33.99 26.22
VIT_08s0040g02670.t01 Wine grape plastid 36.36 25.48
CDX80831 Canola cytosol, plastid 31.23 25.24
PGSC0003DMT400028724 Potato plastid 33.99 25.0
KRH57052 Soybean cytosol 21.34 24.66
GSMUA_Achr7P15300_001 Banana mitochondrion, plastid 32.81 23.99
KRH19745 Soybean plastid 30.83 23.71
Solyc09g005740.1.1 Tomato plastid 32.41 23.16
PGSC0003DMT400061430 Potato plastid 32.02 23.14
Solyc10g085900.1.1 Tomato plastid 27.67 22.88
PGSC0003DMT400091279 Potato plastid 27.67 22.58
CDX92326 Canola plastid 26.09 20.69
CDY54811 Canola plastid 26.09 20.69
CDX92236 Canola plastid 26.09 20.69
CDY53183 Canola plastid 23.32 17.2
CDX72699 Canola plastid 21.74 16.04
CDY53407 Canola cytosol, nucleus, plastid 9.88 15.15
CDY53406 Canola plasma membrane 3.56 3.95
Protein Annotations
EnsemblPlants:CDX73544EnsemblPlantsGene:GSBRNA2T00109074001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR011990InterPro:TPR-like_helical_dom_sfPANTHER:PTHR26312PANTHER:PTHR26312:SF76ProteinID:CDX73544ProteinID:CDX73544.1
SEG:segSUPFAM:SSF48452UniParc:UPI0004EEA095MapMan:35.2::
Description
BnaC08g24590D
Coordinates
chrLK031799:+:1078045..1079052
Molecular Weight (calculated)
28655.1 Da
IEP (calculated)
7.301
GRAVY (calculated)
-0.577
Length
253 amino acids
Sequence
(BLAST)
001: MYSLGRLQLH HQPSHLPLTH TSSSFPKQSS LSIRPNPSLK YPSLKASSSS SSKPQNFILI PLQKSAPFRF LKSTCITLTT AAALLHLKPP AIAAPLTPPN
101: TMEEKEQALE EQLAAHPRNV DTLRSLMEPN AFYTVEIQNQ LKPIEEAMLS CKKENNRHKE HRKHSEALKL YEELAEEEPG DFWPYFCQGA IYTLLKKEDK
201: AEEQYLKFKK LVPENYNYIE DFLVNNLFAG EFFSAMERRS GEFNGGLGGG SES
Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)
001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS
Arabidopsis Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.