Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53407 | Canola | cytosol, nucleus, plastid | 5.7 | 7.88 |
| CDX72699 | Canola | plastid | 10.09 | 6.71 |
| CDY18448 | Canola | plastid | 9.21 | 6.44 |
| CDY53183 | Canola | plastid | 9.21 | 6.12 |
| CDX93382 | Canola | plastid | 8.77 | 6.12 |
| CDY11220 | Canola | plastid | 8.33 | 6.07 |
| CDY46775 | Canola | plastid | 8.33 | 5.76 |
| CDX92326 | Canola | plastid | 7.89 | 5.64 |
| CDY54811 | Canola | plastid | 7.89 | 5.64 |
| CDX92236 | Canola | plastid | 7.46 | 5.33 |
| CDX80831 | Canola | cytosol, plastid | 7.02 | 5.11 |
| KRH58553 | Soybean | plastid | 6.14 | 4.86 |
| KRH42448 | Soybean | mitochondrion, plastid | 6.14 | 4.78 |
| CDX78187 | Canola | plastid | 6.58 | 4.69 |
| CDX73544 | Canola | plastid | 3.95 | 3.56 |
| KRH07405 | Soybean | cytosol | 1.75 | 2.45 |
| CDX95523 | Canola | cytosol | 0.0 | 0.0 |
| Bra037582.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY53406 | EnsemblPlantsGene:GSBRNA2T00010632001 | GO:A0A078IU77 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LC_transporter | InterPro:PQ-loop_rpt | PANTHER:PTHR13131 | PANTHER:PTHR13131:SF5 | PFAM:PF04193 | ProteinID:CDY53406 |
| ProteinID:CDY53406.1 | SMART:SM00679 | TMHMM:TMhelix | UniParc:UPI0004EEFA3E | UniProt:A0A078IU77 | MapMan:35.1 |
Description
BnaCnng25090DBnaCnng25090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU77]
Coordinates
chrLK033197:-:60379..62076
Molecular Weight (calculated)
26455.5 Da
IEP (calculated)
8.203
GRAVY (calculated)
0.460
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYSLLDKNA EAKEQFAKYR ELSPKKFEVE GFVHLICAIF FCCHCVPSWS ISFYPQLILN FRRKSVVGLN FDFVLLNLTK HSSYMIYNVC LYFSPIIQKQ
101: YFDTYGDQEV MIPVAANDVA FSIHAVVLTA LTLFQIFIYE RGPQKVSRFA TGLVVLVWGF AAICFFIALP SHSWLWLITI FNSIQVSMTC VKYIPQSHLC
201: PLPLMVQPII WNYDHSLRFY PTPHTVYS
101: YFDTYGDQEV MIPVAANDVA FSIHAVVLTA LTLFQIFIYE RGPQKVSRFA TGLVVLVWGF AAICFFIALP SHSWLWLITI FNSIQVSMTC VKYIPQSHLC
201: PLPLMVQPII WNYDHSLRFY PTPHTVYS
001: MASWNSIPLE ISYEIVGWIA FASWSISFYP QLILNFRRRS VVGLNFDFVM LNLTKHSSYM IYNVCLYFSP VIQKQYFDTY GDKEMIPVAA NDVAFSIHAV
101: VMTAVTLFQI FIYERGPQKV SRLAIGIVVV VWGFAAICFF IALPTHSWLW LISIFNSIQV FMTCVKYIPQ AKMNFTRKST VGWSIGNILL DFTGGLANYL
201: QMVIQSIDQN SWKNFYGNMG KTLLSLISIF FDILFMFQHY VLYPEKKVSK SPETGEESNE PLIDSSHEHV
101: VMTAVTLFQI FIYERGPQKV SRLAIGIVVV VWGFAAICFF IALPTHSWLW LISIFNSIQV FMTCVKYIPQ AKMNFTRKST VGWSIGNILL DFTGGLANYL
201: QMVIQSIDQN SWKNFYGNMG KTLLSLISIF FDILFMFQHY VLYPEKKVSK SPETGEESNE PLIDSSHEHV
Arabidopsis Description
Cystinosin homolog [Source:UniProtKB/Swiss-Prot;Acc:P57758]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.