Factsheet for Bra037582.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07405	Soybean	cytosol	58.67	26.99
Bra022321.1-P	Field mustard	cytosol	80.0	24.39
KRH42448	Soybean	mitochondrion, plastid	70.67	18.09
KRH58553	Soybean	plastid	69.33	18.06
Bra017190.1-P	Field mustard	cytosol	44.0	16.67
Bra005759.1-P	Field mustard	plastid	40.0	9.58
Bra023116.1-P	Field mustard	plastid	42.67	9.58
Bra007011.1-P	Field mustard	plastid	40.0	9.29
Bra033620.1-P	Field mustard	plastid	33.33	7.29
CDY53406	Canola	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:Bra037582.1	EnsemblPlants:Bra037582.1-P	EnsemblPlantsGene:Bra037582	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	ncoils:Coil	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70	PFAM:PF13174	PFAM:PF13181
PFscan:PS50293	SUPFAM:SSF48452	UniParc:UPI0002545047	UniProt:M4F919	MapMan:35.1	:

Description

AT3G18420 (E=8e-029) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA01:+:22122642..22122869

Molecular Weight (calculated)

9126.0 Da

IEP (calculated)

9.275

GRAVY (calculated)

-0.601

Length

75 amino acids

Sequence
(BLAST)

1: MVKEIRDVRL IIAYIEFLQK NVDEALKSYE QLTKEDPKGF RPYFYRGMIY SFLDKNAEAK EQFAKYKELF QRYLG

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.