Factsheet for Bra007011.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78187	Canola	plastid	96.28	97.19
Bra017190.1-P	Field mustard	cytosol	32.82	53.54
Bra023116.1-P	Field mustard	plastid	50.15	48.5
AT3G53560.2	Thale cress	plastid	56.04	46.65
Bra005759.1-P	Field mustard	plastid	39.94	41.21
Bra037582.1-P	Field mustard	cytosol	9.29	40.0
KRG95856	Soybean	plastid	41.8	38.46
KRH57052	Soybean	cytosol	26.01	38.36
PGSC0003DMT400061430	Potato	plastid	39.94	36.86
Solyc09g005740.1.1	Tomato	plastid	39.94	36.44
PGSC0003DMT400028724	Potato	plastid	38.7	36.34
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	38.39	35.84
VIT_08s0040g02670.t01	Wine grape	plastid	39.63	35.46
KRH67571	Soybean	plastid	35.29	34.76
KRH19745	Soybean	plastid	33.44	32.83
PGSC0003DMT400091279	Potato	plastid	31.27	32.58
Solyc10g085900.1.1	Tomato	plastid	30.65	32.35
Bra022321.1-P	Field mustard	cytosol	24.46	32.11
Bra033620.1-P	Field mustard	plastid	26.63	25.07

Protein Annotations

EnsemblPlants:Bra007011.1	EnsemblPlants:Bra007011.1-P	EnsemblPlantsGene:Bra007011	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	PFscan:PS50005	PFscan:PS50293	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0002542F8F	UniProt:M4CS19	MapMan:35.1	:	:

Description

AT3G53560 (E=6e-062) | chloroplast lumen common family protein

Coordinates

chrA09:-:26819318..26820289

Molecular Weight (calculated)

36768.1 Da

IEP (calculated)

8.208

GRAVY (calculated)

-0.510

Length

323 amino acids

Sequence
(BLAST)

001: MYSLGRLQLH HQPAHLPFTH TSSSFPKQSS LSIRPNPSFK YPSLQASSSS KPQNFILIPL QKSAPFRFLK STCITLTTAA ALLSLKPPAI AAPVRPPTTM
101: EEKEKALEEQ LAAHPHDVDT LRSLMEAKFR SGEFTDAIKL TDRLIKLEPD EPKWPVQKAK CFLYSGDKES AKSVYQEILA KDPLRPEAHH GLCMASSDEG
201: LDWKKVESII EEAMLSCRKE NRHKEYRGFK LLMAQIRVVR GKHGEALKLY EELAEEEPGD FWPYFCQGAI YTLLNKEDKA EEQYLKFKKL VPENYNYIED
301: FLVSNLFAGE LFSAMERRSG SKS

Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)

001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.