Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT2G37400.1 | Thale cress | plastid | 57.47 | 66.97 |
CDX78187 | Canola | plastid | 46.65 | 56.56 |
Bra007011.1-P | Field mustard | plastid | 46.65 | 56.04 |
KRH57052 | Soybean | cytosol | 29.64 | 52.51 |
CDX73544 | Canola | plastid | 31.7 | 48.62 |
KRG95856 | Soybean | plastid | 43.56 | 48.15 |
AT5G02590.1 | Thale cress | cytosol | 39.95 | 47.55 |
VIT_08s0040g02670.t01 | Wine grape | plastid | 43.81 | 47.09 |
KRH67571 | Soybean | plastid | 39.43 | 46.65 |
GSMUA_Achr7P15300_001 | Banana | mitochondrion, plastid | 40.98 | 45.95 |
PGSC0003DMT400028724 | Potato | plastid | 39.43 | 44.48 |
PGSC0003DMT400061430 | Potato | plastid | 39.95 | 44.29 |
Solyc09g005740.1.1 | Tomato | plastid | 39.95 | 43.79 |
KRH19745 | Soybean | plastid | 33.51 | 39.51 |
Solyc10g085900.1.1 | Tomato | plastid | 30.93 | 39.22 |
PGSC0003DMT400091279 | Potato | plastid | 30.15 | 37.74 |
AT3G09490.1 | Thale cress | plastid | 29.12 | 33.83 |
AT3G18420.1 | Thale cress | plastid | 23.45 | 28.8 |
AT4G39470.1 | Thale cress | plastid | 22.68 | 25.81 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:824524 | UniProt:A0A178VKB8 | ProteinID:AEE79108.1 | ProteinID:ANM64241.1 |
ArrayExpress:AT3G53560 | EnsemblPlantsGene:AT3G53560 | RefSeq:AT3G53560 | TAIR:AT3G53560 | RefSeq:AT3G53560-TAIR-G | EnsemblPlants:AT3G53560.2 |
EMBL:AY099742 | EMBL:BT000274 | ProteinID:CAB67663.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 |
GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009941 | GO:GO:0016020 |
InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_001319737.1 | RefSeq:NP_566986.2 | ProteinID:OAP06306.1 |
PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF76 | UniProt:Q9LFG3 | SUPFAM:SSF48452 |
InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI00000AA381 | SEG:seg | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
Coordinates
chr3:-:19859627..19861178
Molecular Weight (calculated)
44003.0 Da
IEP (calculated)
8.691
GRAVY (calculated)
-0.390
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.