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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 3
  • nucleus 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G37400.1 Thale cress plastid 57.47 66.97
CDX78187 Canola plastid 46.65 56.56
Bra007011.1-P Field mustard plastid 46.65 56.04
KRH57052 Soybean cytosol 29.64 52.51
CDX73544 Canola plastid 31.7 48.62
KRG95856 Soybean plastid 43.56 48.15
AT5G02590.1 Thale cress cytosol 39.95 47.55
VIT_08s0040g02670.t01 Wine grape plastid 43.81 47.09
KRH67571 Soybean plastid 39.43 46.65
GSMUA_Achr7P15300_001 Banana mitochondrion, plastid 40.98 45.95
PGSC0003DMT400028724 Potato plastid 39.43 44.48
PGSC0003DMT400061430 Potato plastid 39.95 44.29
Solyc09g005740.1.1 Tomato plastid 39.95 43.79
KRH19745 Soybean plastid 33.51 39.51
Solyc10g085900.1.1 Tomato plastid 30.93 39.22
PGSC0003DMT400091279 Potato plastid 30.15 37.74
AT3G09490.1 Thale cress plastid 29.12 33.83
AT3G18420.1 Thale cress plastid 23.45 28.8
AT4G39470.1 Thale cress plastid 22.68 25.81
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:824524UniProt:A0A178VKB8ProteinID:AEE79108.1ProteinID:ANM64241.1
ArrayExpress:AT3G53560EnsemblPlantsGene:AT3G53560RefSeq:AT3G53560TAIR:AT3G53560RefSeq:AT3G53560-TAIR-GEnsemblPlants:AT3G53560.2
EMBL:AY099742EMBL:BT000274ProteinID:CAB67663.1ncoils:CoilGO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008150
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009941GO:GO:0016020
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734RefSeq:NP_001319737.1RefSeq:NP_566986.2ProteinID:OAP06306.1
PFscan:PS50005PFscan:PS50293PANTHER:PTHR26312PANTHER:PTHR26312:SF76UniProt:Q9LFG3SUPFAM:SSF48452
InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI00000AA381SEG:seg:
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
Coordinates
chr3:-:19859627..19861178
Molecular Weight (calculated)
44003.0 Da
IEP (calculated)
8.691
GRAVY (calculated)
-0.390
Length
388 amino acids
Sequence
(BLAST)
001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.