CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57052	Soybean	cytosol	48.15	77.17
KRH67571	Soybean	plastid	65.53	70.12
Bra017190.1-P	Field mustard	cytosol	34.76	61.62
CDX93382	Canola	plastid	46.72	50.15
CDY46775	Canola	plastid	46.72	49.7
Bra023116.1-P	Field mustard	plastid	47.01	49.4
AT2G37400.1	Thale cress	plastid	46.72	49.25
CDY18448	Canola	plastid	45.01	48.47
Bra005759.1-P	Field mustard	plastid	41.88	46.96
CDY11220	Canola	plastid	41.6	46.65
KRH19745	Soybean	plastid	43.59	46.5
CDX80831	Canola	cytosol, plastid	40.74	45.69
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	44.73	45.38
PGSC0003DMT400028724	Potato	plastid	43.02	43.9
AT3G53560.2	Thale cress	plastid	48.15	43.56
VIT_08s0040g02670.t01	Wine grape	plastid	44.44	43.21
CDX78187	Canola	plastid	39.32	43.12
Solyc09g005740.1.1	Tomato	plastid	42.45	42.09
Bra007011.1-P	Field mustard	plastid	38.46	41.8
PGSC0003DMT400061430	Potato	plastid	41.6	41.71
AT5G02590.1	Thale cress	cytosol	37.61	40.49
CDX73544	Canola	plastid	29.06	40.32
Solyc10g085900.1.1	Tomato	plastid	31.34	35.95
PGSC0003DMT400091279	Potato	plastid	30.77	34.84
AT3G09490.1	Thale cress	plastid	31.91	33.53
KRH07405	Soybean	cytosol	14.53	31.29
KRH42448	Soybean	mitochondrion, plastid	25.64	30.72
KRH58553	Soybean	plastid	25.07	30.56
KRH53808	Soybean	plastid	29.34	28.93
KRH64138	Soybean	plastid	28.49	28.09

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100778644	MapMan:35.1	EMBL:ACUP02012140	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G174700
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1NA14	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRG95856	ProteinID:KRG95856	ProteinID:KRG95856.1	PFAM:PF13174	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000233F5AA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:43488026..43491755

Molecular Weight (calculated)

39940.9 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.409

Length

351 amino acids

Sequence
(BLAST)

001: MLTLTSPSMA LSMDSLPKLR HPSPFPTPLS SSISFRSLPP PHFPSSSSSS FRLHSIRPSS QNHPSFRTPS LPPLLQTLTS FLSPVVETTC IVIAAAALFF
101: MRFHHTPPAI AAPLTPPAAE SDTAFTEEEA ESLLEERLST NPRDTDALHA LMEVKIRARK MDEAFGVLDR LIELEPEELE WPLLKANMHI YNDDHASARE
201: LFEEILKKDP LRVEAFHGLV MATSQSNEPL KGLLKRVEEA IEVCKKQKRD SDVRDFRLLI AQVKVMEGDF SEALKAYQEL VKEEPRDFRP YLCQGIIYTL
301: LRKKDEADKQ FDKFRRLVPK DHPYKDYFED NMFATKFFSQ KLEREGAGAR G

Best Arabidopsis Sequence Match ( AT3G53560.2 )
(BLAST)

001: MTKTLSSYLQ RGENIRNRKA SSSSSSPISL LLAQGFYFSR VYLSHSAIME SLGKLQLHHQ PFHLSFTHTS SSTFPKNLFK SSIQPISSLK SASIKASSSK
101: FQNSITPLPK STPFRLFKST CITLTTAAAL LLANLHLKSP AIAAPIAPPP SVESKENVTL EEEERALDEH LITHPSDVDA LRSLMEVKIK SRKLTEAVEV
201: IDRLIKLEPE EKEWPVLKAN IFTYSGDLDL AKTGFEEILA KDPLRVEAYH GLLMAYSDAG LDLKEVESRI EEAMLKCKKE NNQNDFRDFK LLVAQIRVIE
301: GKHSEALKLY QELVKEEPRD FRPYLCQGII YTLLKKKDKA EEQFDNFRKL VPKNHPYREY FMDNMIATKL FSEKAQREMA EEMAGSTS

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LFG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.