CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42448	Soybean	mitochondrion, plastid	81.6	80.2
KRH07405	Soybean	cytosol	40.97	72.39
CDX95523	Canola	cytosol	19.44	70.89
Bra037582.1-P	Field mustard	cytosol	18.06	69.33
VIT_01s0010g01810.t01	Wine grape	plastid	57.99	53.53
PGSC0003DMT400086906	Potato	plastid	55.21	49.69
Solyc01g008160.2.1	Tomato	plastid	55.21	49.69
AT3G18420.1	Thale cress	plastid	53.12	48.42
KRH57052	Soybean	cytosol	20.83	27.4
KRH19745	Soybean	plastid	30.9	27.05
KRH67571	Soybean	plastid	28.82	25.3
KRG95856	Soybean	plastid	30.56	25.07
KRH53808	Soybean	plastid	27.78	22.47
KRH64138	Soybean	plastid	26.74	21.63
CDY53406	Canola	plasma membrane	4.86	6.14

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100808986	MapMan:35.1	EMBL:ACUP02003269	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G135200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1K395	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH58553	ProteinID:KRH58553	ProteinID:KRH58553.1	PFAM:PF13174	PFAM:PF13181
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233A9E4	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:32769626..32771043

Molecular Weight (calculated)

32022.2 Da

IEP (calculated)

5.011

GRAVY (calculated)

-0.293

Length

288 amino acids

Sequence
(BLAST)

001: MLTSVSSSSI FSFTPKTLTT PPHQSRFTVR AHSKPPIFPN LKTLAGAAVF AAVALQFPAA AARASPPPPP PLETESLSPL SDLLETNTEA LAALKSLLQQ
101: KLELGEDDEA FSILKRLIAA QPDAADWKFL AARLAAETGD VEAARGYYQE VLAANPLSFE ALFENALLMD RCGEGEAAMR RLEEALRVAE EDKKAKEARD
201: VKLIMAQITF LQKNVDEALG IYNQLTKEDP RDFRPYFCRG MIYSLLDRNE EAKEQFAKYR ELSPKKFEVD GYLRTPLSRM KLFSTDES

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.