Factsheet for VIT_01s0010g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022321.1-P	Field mustard	cytosol	53.53	67.89
CDY53407	Canola	cytosol, nucleus, plastid	33.65	63.64
KRH58553	Soybean	plastid	53.53	57.99
KRH42448	Soybean	mitochondrion, plastid	53.53	57.0
CDX92236	Canola	plastid	57.37	56.11
CDX92326	Canola	plastid	57.37	56.11
CDY54811	Canola	plastid	57.37	56.11
KRH07405	Soybean	cytosol	29.17	55.83
AT3G18420.1	Thale cress	plastid	55.13	54.43
PGSC0003DMT400086906	Potato	plastid	55.13	53.75
Solyc01g008160.2.1	Tomato	plastid	55.13	53.75
VIT_07s0031g01760.t01	Wine grape	cytosol	26.92	33.33
VIT_08s0040g02670.t01	Wine grape	plastid	29.17	25.21

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100852583	wikigene:100852583	MapMan:35.1	EMBL:AM475652	ProteinID:CAN72842
ProteinID:CAN72842.1	ProteinID:CCB51209	ProteinID:CCB51209.1	ncoils:Coil	UniProt:F6HG16	EMBL:FN595754
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016043	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100852583
wikigene:LOC100852583	PFAM:PF13432	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015C9DA7
ArrayExpress:VIT_01s0010g01810	EnsemblPlantsGene:VIT_01s0010g01810	EnsemblPlants:VIT_01s0010g01810.t01	unigene:Vvi.3080	RefSeq:XP_003631345	RefSeq:XP_003631345.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:18321134..18322348

Molecular Weight (calculated)

35253.9 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.470

Length

312 amino acids

Sequence
(BLAST)

001: MHCSSPPSLF HFHRSSLSSN VSFAFPRPSI SPSYHHRRLR VSASANNNPI LKAIKTSAGT LVLTAAAVFM MGKFRALPAR AESPMVLSEE SATPEEKSEE
101: SSPLSEFLEN SEALGALKSV LQQKLEDGED GEALKVLERL VSAQPEVVEW KFLMARLLGE MGETDRARDV FEEILASNPL SFEALFGNAL LMDQCGEGDA
201: VIRRLEDALR TAENENKLKE ARDVRLIMAQ MQFLRKNVDE ALRSYEELEK EDPSDFRPYF CKGMIYTLQD RNEEAREQFA KYRERSPKKF EVEGFLQTPL
301: SRMKLFGTDS ES

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.