Factsheet for VIT_08s0040g02670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017190.1-P	Field mustard	cytosol	34.9	63.64
AT2G37400.1	Thale cress	plastid	52.08	56.46
CDX93382	Canola	plastid	49.03	54.13
CDY18448	Canola	plastid	48.75	53.99
CDY46775	Canola	plastid	48.2	52.73
Bra023116.1-P	Field mustard	plastid	48.48	52.4
PGSC0003DMT400028724	Potato	plastid	48.48	50.87
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	48.75	50.87
PGSC0003DMT400061430	Potato	plastid	48.75	50.29
KRH57052	Soybean	cytosol	30.47	50.23
Solyc09g005740.1.1	Tomato	plastid	47.65	48.59
CDY11220	Canola	plastid	39.89	46.01
Bra005759.1-P	Field mustard	plastid	39.89	46.01
CDX80831	Canola	cytosol, plastid	38.78	44.73
KRH67571	Soybean	plastid	40.44	44.51
KRG95856	Soybean	plastid	43.21	44.44
AT3G53560.2	Thale cress	plastid	47.09	43.81
KRH19745	Soybean	plastid	39.34	43.16
AT5G02590.1	Thale cress	cytosol	37.67	41.72
Solyc10g085900.1.1	Tomato	plastid	34.35	40.52
PGSC0003DMT400091279	Potato	plastid	34.07	39.68
Bra007011.1-P	Field mustard	plastid	35.46	39.63
CDX78187	Canola	plastid	34.9	39.38
CDX73544	Canola	plastid	25.48	36.36
VIT_07s0031g01760.t01	Wine grape	cytosol	24.38	34.92
AT3G09490.1	Thale cress	plastid	30.47	32.93
VIT_01s0010g01810.t01	Wine grape	plastid	25.21	29.17

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100267054	wikigene:100267054	MapMan:35.1	ProteinID:CCB57029	ProteinID:CCB57029.1
ncoils:Coil	UniProt:F6HQY0	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100267054	wikigene:LOC100267054	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002108856	ArrayExpress:VIT_08s0040g02670	EnsemblPlantsGene:VIT_08s0040g02670	EnsemblPlants:VIT_08s0040g02670.t01	unigene:Vvi.12525
RefSeq:XP_002277967	RefSeq:XP_002277967.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:13690921..13692930

Molecular Weight (calculated)

41372.8 Da

IEP (calculated)

6.203

GRAVY (calculated)

-0.609

Length

361 amino acids

Sequence
(BLAST)

001: MESLAKLHQR QQPLHLSLYD HRPSFSRPIS SFSFRTSSSS STSKSLFVRA SSSPSSFSRH SPTQDHQNPK SPFFETLLPH FFKASCIAIA AAAVFFARFN
101: VKPVIAAPAA TVEPFKQSTM DSVSDEEKER TVEEYVESHP DDVEGLKSLM EVKIKNRKLQ EAVDVIERLI QLEPDDKEWP LLKAHLYSYS GESELAKLGF
201: EEILSANPLT VEAYHGLVMA VSQSDSGDEL NQVLKRIEAA MERCKKEKKK EDLRDFKLLV AQIRVIEGKY NDALKVYQEL VKEEPRDFRP YLCQGIIYTL
301: LRKKDEAEKQ FQKYRRLVPK GHPYARYFDD NMIATRMEGY QSSLDGSDSN FNFNDDYDDD A

Best Arabidopsis Sequence Match ( AT2G37400.1 )
(BLAST)

001: MESLGKLQLH QQPNHLSFTH FSSSFPKKPS SFSLRSLPRS TSSFKCISIK ASSSKSQDSK LSILKSTCVS FTAAAALFLV NLQLKPSPAI AAPVAATPLM
101: ESLKQSNGNV SFEEEERSLE EYLASHPDDV EALRSLMEVR IKSRKLLEAI ELIDRLIELE PEEKEWPMLK ANIFSYSGDL ESAKTGFEEI LVKDPLRVEA
201: YHGLVMAYSD SGDDLNAVEK RIEEAMVRCK KEKNRKDLRD FKLLVAQIRV IEGKHNEALK LYEELVKEEP RDFRPYLCQG IIYTVLKKEN EAEKQFEKFR
301: RLVPKNHPYR EYFMDNMVAS KLFAEKVQRE MAE

Arabidopsis Description

At2g37400 [Source:UniProtKB/TrEMBL;Acc:Q9ZUS6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.