CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005759.1-P	Field mustard	plastid	99.68	99.68
CDX80831	Canola	cytosol, plastid	89.46	89.46
AT5G02590.1	Thale cress	cytosol	74.76	71.78
CDX93382	Canola	plastid	53.67	51.38
CDY18448	Canola	plastid	53.04	50.92
CDY46775	Canola	plastid	53.35	50.61
KRH57052	Soybean	cytosol	35.14	50.23
KRG95856	Soybean	plastid	46.65	41.6
GSMUA_Achr7P15300_001	Banana	mitochondrion, plastid	45.37	41.04
CDX95523	Canola	cytosol	10.22	40.51
KRH19745	Soybean	plastid	42.49	40.43
Solyc09g005740.1.1	Tomato	plastid	45.37	40.11
KRH67571	Soybean	plastid	41.85	39.94
VIT_08s0040g02670.t01	Wine grape	plastid	46.01	39.89
CDX78187	Canola	plastid	39.94	39.06
PGSC0003DMT400061430	Potato	plastid	43.13	38.57
PGSC0003DMT400028724	Potato	plastid	42.17	38.37
Solyc10g085900.1.1	Tomato	plastid	35.46	36.27
PGSC0003DMT400091279	Potato	plastid	35.78	36.13
CDX73544	Canola	plastid	27.8	34.39
CDY53407	Canola	cytosol, nucleus, plastid	15.02	28.48
CDX92236	Canola	plastid	28.43	27.9
CDY54811	Canola	plastid	28.11	27.59
CDX92326	Canola	plastid	28.11	27.59
CDY53183	Canola	plastid	28.11	25.66
CDX72699	Canola	plastid	27.48	25.07
CDY53406	Canola	plasma membrane	6.07	8.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078F9U7	EnsemblPlants:CDY11220	ProteinID:CDY11220	ProteinID:CDY11220.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00049239001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF76	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0004EEBAC2	SEG:seg	:	:	:

Description

BnaA03g00560DBnaA03g00560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9U7]

Coordinates

chrLK032010:+:261232..262313

Molecular Weight (calculated)

35514.3 Da

IEP (calculated)

7.589

GRAVY (calculated)

-0.613

Length

313 amino acids

Sequence
(BLAST)

001: MASLAKFHYS DQPFHLKLNN GQRSFQPKPT SYRILQKPPP SRAIRASASS PKPSFLKSTC VTLTTAAALF SASLHLSAKP AAATPIAPPP PSSTESIESD
101: QESSLEKHLA TNPNDSEALQ SLMKIKLQSK NLDQALEILN RLISLDPEEQ EWRILKAQVQ TYGGDFDSAT KGFEEILAKD PLRVEAYHGL VMAYSESESK
201: LSELEGRIGE AIERCKREDK KKDFRDFMLL IAQIRVMEGN PSEALRVYEE LVKDEPRDFR PYLCQGLIYT LLKKKDEAEK QFEQFRRLVP ENHPYKEYFD
301: SNMLNTNKLF AKS

Best Arabidopsis Sequence Match ( AT5G02590.1 )
(BLAST)

001: MVSLAKFHYC DQTLHLRLDT HRKPQPKPVS YRILHKPPPS RVIRASSFSS NPKPSFLKTT CVTLTTAAAL LSASLHLSTK PVTAATLVSP PPPPSTAADL
101: TSDQISSRPK EEEEEAALEK HLTKNPNDVE ALQSLMKIKF QTKNIDHALE ILNRLIEIQP EEQEWRILKA QVQTYGGDFD SATKGFEEVL SKDPFRVEAY
201: HGLVMAYSES ESKLSEIESR INEAIEKCKK ENKKDFRDFM LLIAQIRVIK GNPIEALRVY QELVKDEPKD FRPYLCQGLI YTLMKKKDEA EKQFAEFRRL
301: VPENHPYKEY LDANVLNTNK LFAKNQ

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8LEV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.