CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92326	Canola	plastid	100.0	100.0
CDX92236	Canola	plastid	97.18	97.18
Bra022321.1-P	Field mustard	cytosol	73.67	95.53
CDY53407	Canola	cytosol, nucleus, plastid	49.22	95.15
CDX95523	Canola	cytosol	20.06	81.01
AT3G18420.1	Thale cress	plastid	79.62	80.38
VIT_01s0010g01810.t01	Wine grape	plastid	56.11	57.37
Solyc01g008160.2.1	Tomato	plastid	53.29	53.12
PGSC0003DMT400086906	Potato	plastid	52.98	52.81
CDX93382	Canola	plastid	30.09	29.36
CDY46775	Canola	plastid	30.09	29.09
CDY18448	Canola	plastid	29.47	28.83
CDX78187	Canola	plastid	28.84	28.75
CDY11220	Canola	plastid	27.59	28.11
CDX80831	Canola	cytosol, plastid	26.02	26.52
CDX73544	Canola	plastid	20.69	26.09
CDX72699	Canola	plastid	27.27	25.36
CDY53183	Canola	plastid	26.65	24.78
CDY53406	Canola	plasma membrane	5.64	7.89

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078DSS4	EnsemblPlants:CDY54811	ProteinID:CDY54811	ProteinID:CDY54811.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00014680001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13174	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF70	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EE5A1D	SEG:seg	:	:	:	:

Description

BnaA08g29970DBnaA05g20810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078DSS4]

Coordinates

chrLK033352:-:30478..31632

Molecular Weight (calculated)

35837.9 Da

IEP (calculated)

4.924

GRAVY (calculated)

-0.368

Length

319 amino acids

Sequence
(BLAST)

001: MFTSLSAPSS LPSSLAFSLV SVKSHPAAGH IVPRRDLVSL RIRASKNGSS DYCFHEKLKS FAKSAILIGA AVSMTGKLST LPAKAESPVT TTEELKDENV
101: SSEIEPTSPL TELLESTPEA VKTLRSLLQQ KLENGEDEEA LKLLERLVTA QPDETEWKFL MARLLGEMGR TENARQVFEE ILQRNPLSFE ALFENALLMD
201: RSGEGDAVLQ RLEDALAVAE AENMVKEIRD VRLIIAQIQF LQKNVDEALR SYEQLTREDP KDFRPYFCRG MIYSLLDKNV EAKEQFAKYR ELSPKKFEVE
301: GYLRTPLSKM KLFGSGEDN

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.