Factsheet for Solyc01g008160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086906	Potato	plastid	99.38	99.38
Bra022321.1-P	Field mustard	cytosol	50.31	65.45
CDY53407	Canola	cytosol, nucleus, plastid	30.0	58.18
KRH07405	Soybean	cytosol	28.44	55.83
KRH58553	Soybean	plastid	49.69	55.21
VIT_01s0010g01810.t01	Wine grape	plastid	53.75	55.13
KRH42448	Soybean	mitochondrion, plastid	50.0	54.61
AT3G18420.1	Thale cress	plastid	52.81	53.48
CDX92236	Canola	plastid	53.12	53.29
CDX92326	Canola	plastid	53.12	53.29
CDY54811	Canola	plastid	53.12	53.29
Solyc10g085900.1.1	Tomato	plastid	25.62	26.8
Solyc04g051660.2.1	Tomato	plastid	28.12	26.09
Solyc09g005740.1.1	Tomato	plastid	22.81	20.62

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016043	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K4AT14	PFAM:PF13432	PFscan:PS50293	PANTHER:PTHR26312
PANTHER:PTHR26312:SF70	SMART:SM00028	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc01g008160.2	EnsemblPlants:Solyc01g008160.2.1	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0002762D04	SEG:seg	:	:

Description

protein SLOW GREEN 1, chloroplastic [Source:Projected from Arabidopsis thaliana (AT3G18420) UniProtKB/Swiss-Prot;Acc:Q9LS48]

Coordinates

chr1:-:2304525..2306017

Molecular Weight (calculated)

36272.1 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.519

Length

320 amino acids

Sequence
(BLAST)

001: MNSTLTIGSS SFFHHSTTFP NSPSRSSIFT IPKTAHKSYS RRFVLQASVN GNSKSNPLIS TLKSAGVAVV FAAVALGKFP VGTSLARAET PPAAVMEEQQ
101: QQEEEEGSPL TQFLESSPEA IEALKNLLQE KLESGEDEES LKILKKLSSA QPENTEWKFL TARLLNEMGK LEDAREVFEE ILSKTPLSFE ALFENALLMD
201: RCGEGVKVIQ RLEEALRLAE EESKVKESRD IRFIMAQVQF LQKNVEEALR SYDELEKEDP KDFRPYFCRG MIYSLLDRNK EAREQFAKYR ELSPKKFEVE
301: GYLRTALSRM KLFGTDEKES

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.