Factsheet for Bra022321.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53407	Canola	cytosol, nucleus, plastid	65.04	96.97
Bra037582.1-P	Field mustard	cytosol	24.39	80.0
CDX92236	Canola	plastid	95.53	73.67
CDX92326	Canola	plastid	95.53	73.67
CDY54811	Canola	plastid	95.53	73.67
AT3G18420.1	Thale cress	plastid	84.15	65.51
VIT_01s0010g01810.t01	Wine grape	plastid	67.89	53.53
Solyc01g008160.2.1	Tomato	plastid	65.45	50.31
PGSC0003DMT400086906	Potato	plastid	65.04	50.0
Bra017190.1-P	Field mustard	cytosol	27.24	33.84
Bra005759.1-P	Field mustard	plastid	32.11	25.24
Bra023116.1-P	Field mustard	plastid	33.74	24.85
Bra007011.1-P	Field mustard	plastid	32.11	24.46
Bra033620.1-P	Field mustard	plastid	30.89	22.16

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra022321	EnsemblPlants:Bra022321.1	EnsemblPlants:Bra022321.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016043	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4E0M4
PFAM:PF13174	PFAM:PF14559	PFscan:PS50293	PANTHER:PTHR26312	PANTHER:PTHR26312:SF70	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000254815E	:

Description

AT3G18420 (E=3e-116) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA05:+:18420694..18421434

Molecular Weight (calculated)

28214.7 Da

IEP (calculated)

4.439

GRAVY (calculated)

-0.554

Length

246 amino acids

Sequence
(BLAST)

001: MTGKLSTLPA KAESPVTTTE EVKEENFSSE IEPTSPLTEL LESTPEAVKT LRSLLQQKLE NGEDEEALKL LERLVTAQPE ETEWKFLMAR LLGEMGRTQN
101: ARQVFEEILQ RNPLSFEALF ENALLMDRSG EGDAVLQRLE DALAVAEAEN MVKEIRDVRL IIAQIQFLQK NVDEALRSYE QLTREDPKDF RPYFCRGMIY
201: SLLDKNVEAK EQFAKYRELS PKKFEVEGYL RTPLSKMKLF GSGEDN

Best Arabidopsis Sequence Match ( AT3G18420.1 )
(BLAST)

001: MISSLSASSS LVSSFVAVKA TPVTGPLIPR RDLLSIRIRA SSNQNSSGYC FPEKFKSFAK SAILIGAAVS MTGKFSTLPV KAESPVTTIE KTYEEVKEEK
101: LSEITPLSEL LDSTPEAVET LRSLLQQKLE KGEDEEALKL LERLVAAQPE ETEWKFLMAR LLGEMGRPEN ARQMFEEILQ RNPLSFEALF ENALLMDRSG
201: EGNAVLQRLE DALAVAEAEY LVKEARDVRL IIAQIHFLQK NVDEALKSYE QLTKEDPKDF RPYFCRGMIY SLLDKNVEAK EQFAKYRELS PKKFEVEGYL
301: RTPLSKMKLF GGSEEN

Arabidopsis Description

SG1protein SLOW GREEN 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS48]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.