CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033620.1-P	Field mustard	plastid	98.54	98.54
CDX72699	Canola	plastid	94.75	94.75
AT4G39470.1	Thale cress	plastid	81.34	81.82
PGSC0003DMT400080145	Potato	cytosol	25.07	64.18
VIT_07s0031g01760.t01	Wine grape	cytosol	43.15	58.73
PGSC0003DMT400080166	Potato	plastid	47.81	47.54
Solyc04g051660.2.1	Tomato	plastid	46.94	46.67
KRH64138	Soybean	plastid	47.52	45.79
KRH53808	Soybean	plastid	47.52	45.79
GSMUA_Achr6P00760_001	Banana	plastid	42.86	41.18
OQU77561	Sorghum	plastid	34.99	34.78
TraesCS1A01G120800.1	Wheat	plastid	37.9	34.21
CDX95523	Canola	cytosol	7.87	34.18
TraesCS1D01G121600.1	Wheat	plastid	37.32	33.68
Os05t0182100-01	Rice	plastid	37.32	32.32
Zm00001d037616_P001	Maize	plastid	34.4	31.81
CDY53407	Canola	cytosol, nucleus, plastid	15.16	31.52
TraesCS1B01G140100.1	Wheat	plastid	37.32	30.77
HORVU1Hr1G027550.1	Barley	plastid	37.03	30.68
CDX80831	Canola	cytosol, plastid	25.95	28.43
CDY46775	Canola	plastid	27.11	28.18
CDX93382	Canola	plastid	26.82	28.13
CDY11220	Canola	plastid	25.66	28.11
CDY18448	Canola	plastid	25.66	26.99
CDY54811	Canola	plastid	24.78	26.65
CDX92326	Canola	plastid	24.78	26.65
CDX78187	Canola	plastid	24.78	26.56
CDX92236	Canola	plastid	24.49	26.33
CDX73544	Canola	plastid	17.2	23.32
CDY53406	Canola	plasma membrane	6.12	9.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078IW57	EnsemblPlants:CDY53183	ProteinID:CDY53183	ProteinID:CDY53183.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00008735001	InterPro:IPR002885	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	PFAM:PF01535	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR26312	PANTHER:PTHR26312:SF67	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0004EDF779	:	:	:	:

Description

BnaA06g40620DBnaA06g40620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IW57]

Coordinates

chrLK033173:+:53952..55460

Molecular Weight (calculated)

39107.4 Da

IEP (calculated)

9.610

GRAVY (calculated)

-0.438

Length

343 amino acids

Sequence
(BLAST)

001: MSPVGVSALS SPAKFHRRRE KAQTFTPTHF PNPNGFPSPW RKSRPFAPKL SQSLNFASPS PHLPLIRSST PPSSKDFLQI LARKAAIVLV GSFVFLGFCS
101: SKPALALPTA TASSQTELED EEMFEKVLES EPENMEAMKA VLYKKMRRGK PEDAVKYVEK LMKLEPREVE WKLLEALCYE TMGQLSKAKR LFKDILRDNP
201: LLIRALHGLA MVMHKSHDSS VFDMLNEAME VARQGNRVTE ERNIQVLIGQ MHIVKGQFEE ALKIFQEMVK DNPRDFRPYL CQGIVYSLMD KKEEADQQFE
301: IYWSLAPEEF PQKGFLDDVA LAAQAKSRER LQNTFKAKFT HGK

Best Arabidopsis Sequence Match ( AT4G39470.1 )
(BLAST)

001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R

Arabidopsis Description

AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.