Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0031g01760.t01 | Wine grape | cytosol | 75.37 | 40.08 |
| PGSC0003DMT400080166 | Potato | plastid | 98.51 | 38.26 |
| Solyc04g051660.2.1 | Tomato | plastid | 97.76 | 37.97 |
| CDX72699 | Canola | plastid | 64.93 | 25.36 |
| Bra033620.1-P | Field mustard | plastid | 64.18 | 25.07 |
| CDY53183 | Canola | plastid | 64.18 | 25.07 |
| KRH64138 | Soybean | plastid | 66.42 | 25.0 |
| AT4G39470.1 | Thale cress | plastid | 61.94 | 24.34 |
| KRH53808 | Soybean | plastid | 64.18 | 24.16 |
| OQU77561 | Sorghum | plastid | 58.96 | 22.9 |
| GSMUA_Achr6P00760_001 | Banana | plastid | 60.45 | 22.69 |
| TraesCS1D01G121600.1 | Wheat | plastid | 60.45 | 21.32 |
| Zm00001d037616_P001 | Maize | plastid | 58.96 | 21.29 |
| TraesCS1A01G120800.1 | Wheat | plastid | 59.7 | 21.05 |
| Os05t0182100-01 | Rice | plastid | 58.96 | 19.95 |
| TraesCS1B01G140100.1 | Wheat | plastid | 60.45 | 19.47 |
| HORVU1Hr1G027550.1 | Barley | plastid | 59.7 | 19.32 |
| PGSC0003DMT400086906 | Potato | plastid | 35.82 | 15.0 |
| PGSC0003DMT400061430 | Potato | plastid | 35.07 | 13.43 |
| PGSC0003DMT400028724 | Potato | plastid | 33.58 | 13.08 |
| PGSC0003DMT400091279 | Potato | plastid | 28.36 | 12.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400080145 | EnsemblPlantsGene:PGSC0003DMG400031201 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR26312 | PANTHER:PTHR26312:SF67 |
| PFscan:PS50293 | PGSC:PGSC0003DMG400031201 | SUPFAM:SSF48452 | UniParc:UPI0002968E8F | UniProt:M1D324 | MapMan:35.1 |
Description
Chloroplast lumen common family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031201]
Coordinates
chr4:-:54551048..54555727
Molecular Weight (calculated)
15797.0 Da
IEP (calculated)
5.373
GRAVY (calculated)
-0.582
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMHKNFEGP AVFEMLNGAL EVARQEKRVN EERNIKILVA QMHVVKGELE EALQKFKLLV QENPRDFRPY LCQGIVYSLL DKKKEADEQF EIYRSLVPKE
101: FPQRGFLDDV VLAAKTETRE QLEKEFKNEF SYNT
101: FPQRGFLDDV VLAAKTETRE QLEKEFKNEF SYNT
001: MCSIGVTALC SPAKFHHRRE QSLIFTPTHL RNPNGFQFRW RKSRPFAPRL AQPDNFAPPL PLIRSSTSLL SSKDFVQMLA RKAAILLVGS FVFLGFCSSK
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R
101: PALALPTATV VSQAELEDEK MFEKLLENEP ENMEAMKAVV YKKMRRGKNE DAVKYVEKLM KLEPHEVEWK LLEALCYETM GELSKAKRLY KDILKEQPLL
201: IRALHGLAMV MHKTHDTSVF DMLIEAMEVA RQGNRVTEER NIQVLIGQMH IVEGQFEEGL KIFQQMVNDN PRDFRPYLCQ GIVYSLMDKK EEAAQQFEIY
301: WSLVPGEFPQ KGFLDDVALA AQAKSRERLQ NTFKAKFTQG R
Arabidopsis Description
AT4g39470/F23K16_100 [Source:UniProtKB/TrEMBL;Acc:Q94A56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.