Factsheet for PGSC0003DMT400062931

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114160.1.1	Tomato	cytosol	93.55	93.55
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	60.12	60.38
KRH03317	Soybean	cytosol, plastid	57.33	57.84
KRH54418	Soybean	cytosol, plastid	53.23	53.15
PGSC0003DMT400082693	Potato	cytosol	18.18	50.82
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	39.74	48.39
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	31.96	47.91
GSMUA_Achr9P14560_001	Banana	cytosol	36.51	42.56
GSMUA_Achr3P06160_001	Banana	plastid	33.14	39.86
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	39.0	38.33
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	38.27	37.77
TraesCS2B01G499300.1	Wheat	plasma membrane	37.68	37.3
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	37.54	37.16
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	38.42	36.69
Os09t0378700-00	Rice	plasma membrane, plastid	37.98	36.38
Zm00001d020332_P001	Maize	cytosol	37.1	36.25
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	36.95	35.95
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	36.66	35.66
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	36.66	35.66
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	36.22	35.24
KXG35540	Sorghum	plasma membrane	36.8	35.06
Os08t0415600-00	Rice	cytosol	36.22	34.45
PGSC0003DMT400077205	Potato	cytosol	31.82	31.96
PGSC0003DMT400019235	Potato	cytosol	28.74	31.41
PGSC0003DMT400001049	Potato	cytosol	28.89	29.67
PGSC0003DMT400073254	Potato	cytosol	31.09	29.28
PGSC0003DMT400078166	Potato	cytosol	28.01	28.9
PGSC0003DMT400016998	Potato	cytosol	18.77	28.51
PGSC0003DMT400015349	Potato	cytosol	26.69	28.13
PGSC0003DMT400078473	Potato	cytosol	26.39	27.69
PGSC0003DMT400075612	Potato	cytosol	26.1	27.6
PGSC0003DMT400025648	Potato	cytosol	26.1	27.43
PGSC0003DMT400071349	Potato	plastid	27.42	27.02
PGSC0003DMT400011486	Potato	cytosol	14.08	26.89
PGSC0003DMT400030161	Potato	cytosol	13.34	25.42
PGSC0003DMT400027542	Potato	cytosol	13.2	25.28
PGSC0003DMT400039084	Potato	cytosol	16.28	25.06
PGSC0003DMT400034564	Potato	nucleus, plastid	15.54	23.14
PGSC0003DMT400060674	Potato	plastid	15.1	22.84
PGSC0003DMT400026700	Potato	cytosol	23.61	20.69
PGSC0003DMT400046295	Potato	cytosol	24.49	20.34
PGSC0003DMT400027406	Potato	cytosol	7.04	17.98

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102591646	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1C9T1
PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400024491	PGSC:PGSC0003DMG400024491	EnsemblPlants:PGSC0003DMT400062931	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF161	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002961669
InterPro:Ubox_domain	RefSeq:XP_006345042.1	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024491]

Coordinates

chr3:+:54010767..54013181

Molecular Weight (calculated)

76348.8 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.045

Length

682 amino acids

Sequence
(BLAST)

001: MIQRFDRNDR RILTFPAVHP CEGISPATLL DSLITLSQGI CTFKSKFFPS QRRNVREMIR QVGILLIFFE EIRDHLPSDR DSIVLCFAEL HTTFQKIKFL
101: LDDCMREGAK TWMLMKSHSV ASQFQVLVRT VATALDVLPL NSLNVSREIK ELVLMVANQA QRAKMELDPE DEEAVKRIIL LLNQFENKFQ PDPRVIKKFL
201: DYLDITTWAE CHKEIKFLED EINFECSENY EREVPMLSSL VGFLSYCRGI LFEDSVYGNT DQSDGTSNLE TLSCLNPEDF RCPISLELMT DPVTVSTGQT
301: YDRASIHKWL KSGNLLCPKT GETLQSTELV PNSSLRNLIQ QFCADNGISL AKSRKKNRDI SRTILPGNPA AAEAIKFLSE FLACRLYFGS DQQKTKAAYE
401: IRLLAKSNIF NRSVLIEAAT ITALLQMLSS NDPSMQEHSI SALLKLSKHS NGKKVIMENR GLNSILGVLK NGLKLESKQI AAAIIFYISS PREYRKLVGE
501: NPEVFPALVD LIKHGTSCGK KNAIVAIFGL LLSHRNHERA LAAGTVLALV NLLSSSDKVE LNTDALAVLA TLAERTEGSF VILEASALPV ILNQLQNTTS
601: RAGKEYCVSI LLSLCVNSGA EVLAALVREK ALMPLLYSLL TEGTSQAKKR TRSLIKILQR FCETSTSRLV SEVPQEQFID VR

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.