Factsheet for TraesCS2B01G499300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 3
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	96.08	96.08
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	95.65	95.37
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	68.21	67.72
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	69.96	67.51
Os08t0415600-00	Rice	cytosol	67.49	64.85
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	60.67	59.63
GSMUA_Achr9P14560_001	Banana	cytosol	39.33	46.32
GSMUA_Achr3P06160_001	Banana	plastid	36.28	44.09
VIT_01s0026g00190.t01	Wine grape	cytosol	40.06	40.41
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	39.33	39.91
PGSC0003DMT400082693	Potato	cytosol	13.79	38.93
KRH03317	Soybean	cytosol, plastid	38.17	38.91
KRH69547	Soybean	cytosol, plastid	40.2	38.85
PGSC0003DMT400062931	Potato	cytosol	37.3	37.68
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	30.33	37.32
Solyc03g114160.1.1	Tomato	cytosol	36.72	37.1
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	35.7	35.91
CDY55050	Canola	cytosol	36.14	35.78
KRH54418	Soybean	cytosol, plastid	35.41	35.72
Bra019924.1-P	Field mustard	mitochondrion	35.99	35.68
CDX93411	Canola	mitochondrion	35.85	35.39
AT1G60190.1	Thale cress	cytosol, plastid	34.98	35.13
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	23.08	34.95
CDY24520	Canola	cytosol	33.96	34.72
Bra031521.1-P	Field mustard	cytosol	33.96	34.56
AT1G10560.1	Thale cress	cytosol	34.69	34.29
CDY54132	Canola	cytosol	33.82	34.26
CDY04344	Canola	cytosol	15.67	33.86
CDY04342	Canola	cytosol	15.82	32.73
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	11.47	31.1
TraesCS1B01G310100.1	Wheat	plastid	26.71	27.3
TraesCS6B01G222200.1	Wheat	cytosol	16.4	26.97
TraesCS5B01G087500.1	Wheat	cytosol	26.12	26.39
TraesCS3B01G377600.1	Wheat	plastid	26.27	26.35
TraesCS6B01G324000.1	Wheat	cytosol	24.24	25.97
TraesCS2B01G213900.1	Wheat	cytosol	12.34	23.55
TraesCS7B01G473200.1	Wheat	cytosol	22.79	23.29
TraesCS4B01G206900.1	Wheat	plastid	25.83	23.24
TraesCS7B01G186600.1	Wheat	cytosol	21.63	23.14
TraesCS2B01G216300.1	Wheat	plastid	14.66	22.05
TraesCS2B01G294100.1	Wheat	nucleus	14.66	21.96
TraesCS3B01G422200.1	Wheat	cytosol	13.5	21.04
TraesCS3B01G443500.1	Wheat	cytosol	15.24	19.85
TraesCS3B01G591000.1	Wheat	cytosol	22.35	18.53

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF229	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2B01G499300	EnsemblPlants:TraesCS2B01G499300.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:695449463..695451532

Molecular Weight (calculated)

73281.1 Da

IEP (calculated)

7.911

GRAVY (calculated)

0.186

Length

689 amino acids

Sequence
(BLAST)

001: MPPHDRKAAP GRRMLALPTV CPCEAIAPGT LLASLVALVA EVARHDAAAL PVLRRGAGEA LRITRVLLAF LEEVREAAAP LPDASVLGLS ELHVAMQKLR
101: FLLADCSRRG ARLWVLMNAD LVASELRFVL CSVATAMDVL PADVVGASVE AGELARLLSQ QAWRAPVWPD EDDGRAIRSV RSMLALFRGS ATPHAEDAMM
201: VLGRVGITSW CDCAEEATFL EAELLDRLED GRENDNDLVL ISGLMAFLVY CRVVLFDSVD AKKADAAAPG SRPAASCAAW TSQEALQCPI SLELMTDPVT
301: VTTGQTYDRT SIKRWVKGGC RTCPVTGEKL RSAQFVPNVA VRGIVEQLLL ANGTPLHEQQ SSKHRCAVDK TASAFGPAAA GGVRLAVAFL IARLSRGTPE
401: EQKKAAFEVR KLAKRNVYHR ACLVEADAVP WLLHLLSSAD ASVQDNAIAS LLNLSKHAAG RRALVEAGGL GLVVDAVNVA AKVEARQNAA AIMFYLSPNS
501: EYCQEIGRIP EAIPTLVRLM RDGTYRGRKN ALVSLHGVLH GASSIGKAVT AGAVGVLATL LSGDREDLAN DSVALLARIG EQPAGATAIL ASSELFTSLV
601: DFLGASASRS GKDHCVALLA SLCMHGGDKV VALMGKMTAL MPALYALIAD GSPLANKKAR WLINEIHRVY EQRQPPPVVP PAGDRVIRV

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.