Factsheet for TraesCS1B01G310100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G299400.1	Wheat	cytosol, plastid	96.29	97.3
TraesCS1A01G300000.1	Wheat	cytosol	95.55	96.41
HORVU1Hr1G069990.1	Barley	plastid	95.1	93.99
Os05t0476700-01	Rice	plastid	82.94	82.57
OQU78182	Sorghum	plastid	80.12	79.53
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	78.78	79.25
TraesCS3B01G377600.1	Wheat	plastid	76.71	75.25
GSMUA_Achr8P25140_001	Banana	plastid	34.87	55.95
GSMUA_Achr7P22130_001	Banana	cytosol	49.55	52.76
GSMUA_Achr4P00200_001	Banana	plastid	52.82	50.57
PGSC0003DMT400071349	Potato	plastid	44.66	43.5
Solyc09g018230.1.1	Tomato	plastid	44.36	43.46
Bra001998.1-P	Field mustard	cytosol	38.43	43.38
AT5G01830.1	Thale cress	plastid	43.18	43.18
VIT_08s0058g01100.t01	Wine grape	plastid	43.32	43.13
CDX71307	Canola	cytosol	41.84	41.9
Bra019022.1-P	Field mustard	cytosol	41.84	41.84
CDY31406	Canola	cytosol	41.69	41.69
KRH76105	Soybean	cytosol, plastid	42.73	41.03
KRH65448	Soybean	plastid	29.53	40.78
TraesCS6B01G222200.1	Wheat	cytosol	23.15	37.23
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	13.2	35.04
TraesCS2B01G294100.1	Wheat	nucleus	19.88	29.13
TraesCS2B01G213900.1	Wheat	cytosol	15.28	28.53
TraesCS6B01G324000.1	Wheat	cytosol	26.26	27.53
TraesCS5B01G087500.1	Wheat	cytosol	27.6	27.27
TraesCS2B01G499300.1	Wheat	plasma membrane	27.3	26.71
TraesCS4B01G206900.1	Wheat	plastid	29.82	26.24
TraesCS7B01G186600.1	Wheat	cytosol	24.63	25.78
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	26.71	25.68
TraesCS2B01G216300.1	Wheat	plastid	17.06	25.11
TraesCS7B01G473200.1	Wheat	cytosol	24.93	24.93
TraesCS3B01G422200.1	Wheat	cytosol	15.43	23.53
TraesCS3B01G443500.1	Wheat	cytosol	16.91	21.55
TraesCS3B01G591000.1	Wheat	cytosol	24.93	20.22

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS1B01G310100	EnsemblPlants:TraesCS1B01G310100.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:532693297..532695321

Molecular Weight (calculated)

71535.1 Da

IEP (calculated)

7.506

GRAVY (calculated)

0.074

Length

674 amino acids

Sequence
(BLAST)

001: MASARNAAPE PSSSSSSPYS SSASDVEILR SLRCLARDLA AADPPAPFLR AVFASVSRRA RLLVAVFDDL LLLGASAALP RSASLCLREV LLVLQRFKAV
101: VADCSARSRM RLLLQSDEVA ARVRELQHDL ATLLDILPVG ELGLADDVAD LLTLASRQCR RRAPEAAAEQ ELKASVLALI QEVEREIVPE RERLEAILEE
201: VAINDPASCS QEIEILEREI GDRLAERWTS AMIALVGLLR YAKCVLFSAA TPRPLDSKVD ADDDDAEPLA PPPDFRCPIS LDLMRDPVVS ASGQTYDRES
301: ITRWFGAGKS TCPKTGQVLT NLELVPNKAL KNLISRWCRE NGVAMEGSEP GKPEPAPPVA ANKAAVEAAR MTASFLVKKL SASFSPSSDN RVVHEIRLLA
401: KSGSESRAFI GEAGAVPLLV PLLNSEDAAL QVNAVTALLN LSILDANKKR IMHADGAVAA LCQVMGSGAT WRAKENAAAT VLSLSAVHTY RRRLGRNPLV
501: IEKVVLLVRT GPPSTKKDAL AALLCLSAER ENVGKLVSAG AAEAALSAIS EEETAAAVLA SLAKRGGAEA IVNIDGAVAK LVAEMRRGTE WSRECAAAAL
601: VLLCRRAGAA AASQVLAING VEWAIWELMG SGSERARRKA ASLGRTCRRW AAANAAQNAE FPTSTVSPAT VAAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.