CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65448	Soybean	plastid	61.82	88.93
VIT_08s0058g01100.t01	Wine grape	plastid	59.4	61.6
Solyc09g018230.1.1	Tomato	plastid	59.83	61.05
PGSC0003DMT400071349	Potato	plastid	60.11	60.98
AT5G01830.1	Thale cress	plastid	53.56	55.79
Bra001998.1-P	Field mustard	cytosol	47.15	55.44
GSMUA_Achr8P25140_001	Banana	plastid	32.34	54.05
CDY31406	Canola	cytosol	51.57	53.71
Bra019022.1-P	Field mustard	cytosol	51.42	53.56
CDX71307	Canola	cytosol	51.28	53.49
GSMUA_Achr4P00200_001	Banana	plastid	44.87	44.74
GSMUA_Achr7P22130_001	Banana	cytosol	39.6	43.92
TraesCS1A01G300000.1	Wheat	cytosol	41.31	43.41
TraesCS1B01G310100.1	Wheat	plastid	41.03	42.73
TraesCS1D01G299400.1	Wheat	cytosol, plastid	40.6	42.73
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	40.74	42.69
Zm00001d012494_P001	Maize	cytosol	40.31	42.68
Zm00001d043043_P001	Maize	cytosol	40.31	42.68
OQU78182	Sorghum	plastid	41.17	42.56
Os05t0476700-01	Rice	plastid	40.74	42.25
HORVU1Hr1G069990.1	Barley	plastid	40.88	42.08
TraesCS3A01G345800.1	Wheat	plastid	40.88	42.02
Os01t0823900-01	Rice	plastid	40.6	41.91
HORVU3Hr1G081300.1	Barley	plastid	41.03	41.86
TraesCS3B01G377600.1	Wheat	plastid	40.74	41.63
TraesCS3D01G339600.1	Wheat	plastid	40.74	41.51
KXG33626	Sorghum	plastid	40.88	40.88
KRH21208	Soybean	mitochondrion	35.9	35.2
KRH11061	Soybean	mitochondrion, plastid	35.19	34.5
KRH59027	Soybean	mitochondrion	34.9	34.27
KRH42917	Soybean	mitochondrion	34.05	33.43
KRH04403	Soybean	mitochondrion	17.09	33.15
KRG91959	Soybean	cytosol	29.2	32.49
KRH17146	Soybean	cytosol	10.97	32.35
KRH34817	Soybean	cytosol	29.06	32.28
KRH73275	Soybean	cytosol	23.36	32.22
KRH50347	Soybean	nucleus	28.06	30.12
KRG89279	Soybean	cytosol	27.64	29.8
KRH24807	Soybean	cytosol	28.06	29.76
KRG97080	Soybean	cytosol, nucleus	18.52	29.55
KRH29807	Soybean	cytosol	27.78	29.5
KRH68828	Soybean	cytosol	17.95	29.3
KRH03317	Soybean	cytosol, plastid	26.92	27.96
KRH15451	Soybean	cytosol	10.68	27.68
KRH46608	Soybean	cytosol	17.95	27.33
KRG92593	Soybean	cytosol	17.24	27.31
KRH00831	Soybean	cytosol	24.64	27.24
KRG99865	Soybean	cytosol	23.79	27.07
KRH40395	Soybean	cytosol	24.07	26.61
KRG99581	Soybean	cytosol	17.38	26.46
KRH69547	Soybean	cytosol, plastid	26.35	25.95
KRH52088	Soybean	cytosol	11.97	25.69
KRH54418	Soybean	cytosol, plastid	24.64	25.33
KRH05594	Soybean	cytosol	12.11	24.15
KRH33490	Soybean	cytosol	17.52	23.43
KRH51173	Soybean	cytosol	13.82	22.66
KRH72794	Soybean	plasma membrane	25.5	22.02
KRH01984	Soybean	cytosol	13.25	21.88
KRH30135	Soybean	cytosol	25.5	21.36
KRG98177	Soybean	cytosol	25.5	21.28
KRH11541	Soybean	plastid	13.68	21.01
KRH36562	Soybean	plastid	13.68	20.96
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.65	19.53
KRH32190	Soybean	cytosol	17.38	18.4
KRH67390	Soybean	cytosol, plastid	21.65	17.76

Protein Annotations

EntrezGene:100784832	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02000564	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	EnsemblPlantsGene:GLYMA_01G131800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	UniProt:I1J7N4	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	EnsemblPlants:KRH76105
ProteinID:KRH76105	ProteinID:KRH76105.1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002336FA1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:44840361..44842991

Molecular Weight (calculated)

76152.4 Da

IEP (calculated)

7.457

GRAVY (calculated)

0.025

Length

702 amino acids

Sequence
(BLAST)

001: MAISPETFPT RKRRPENMAS FMSPKINDLN VLCSLLQLTD QICSLNLTTT LLNRVSSSTI RKTQLLGVVF EELVRVSNLN SNSSVLFLCL EEMYIVLHNI
101: KILIEDFSNG SKFNLLMQIE TVADNFHRLT GELSTLLDVL PLQELDLNDD VRELALLVRK QGSEAKAFIG AEQISLRNDV VFVLDRIKNE IVPDQAHLAS
201: IFEKLEIRDA SSCRAEIESL EEEIHNRSEE QPKTDLVALI GLVRFAKCVL YGASTPSQKT VTMRRNQSLE LTIPADYRCP ISLELMRDPV VVATGQTYDR
301: ASIKLWMDSG HNTCPKTGQT LSHTELIPNR VLRNMIAAWC REQRIPFKVE TVTGKHNSGV TNKAALEATR MMVSFLVNKL KGNGHGKEDN DNVNVPLSVE
401: DANGVVYELR VLAKTDSGSR ACIAEAGAIP LLVRFLNAEE NPSLQVNAVT TILNLSILEA NKTKIMETDG ALNGVAEVLI SGATWEAKAN AAATVFSLSG
501: VAAHRRRLGR KTRVVSGLVG LAKTGPEGAR RDALAAVLNL AADRETVARL VEGGVVGMAA EVMAAMPEEG VTILEAVVKR GGLVAVAAAY AGIKRLGAVL
601: REGSERARES AAATLVTMCR KGGSEVVAEL AAVPGVERVI WELMAVGSVR GRRKAATLLR IMRRWAAGID GGENEGFTTT TTTMVASSTT MVVPTTTSSL
701: AQ

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.