Factsheet for Os05t0476700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G310100.1	Wheat	plastid	82.57	82.94
TraesCS1A01G300000.1	Wheat	cytosol	81.68	82.78
TraesCS1D01G299400.1	Wheat	cytosol, plastid	81.24	82.46
HORVU1Hr1G069990.1	Barley	plastid	82.72	82.11
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	80.06	80.9
OQU78182	Sorghum	plastid	80.5	80.27
Os01t0823900-01	Rice	plastid	76.51	76.18
GSMUA_Achr8P25140_001	Banana	plastid	37.22	60.0
GSMUA_Achr7P22130_001	Banana	cytosol	50.37	53.87
GSMUA_Achr4P00200_001	Banana	plastid	53.91	51.85
Bra001998.1-P	Field mustard	cytosol	38.7	43.89
VIT_08s0058g01100.t01	Wine grape	plastid	43.13	43.13
AT5G01830.1	Thale cress	plastid	42.69	42.88
CDX71307	Canola	cytosol	42.25	42.5
PGSC0003DMT400071349	Potato	plastid	43.43	42.49
Solyc09g018230.1.1	Tomato	plastid	43.13	42.44
Bra019022.1-P	Field mustard	cytosol	42.25	42.43
CDY31406	Canola	cytosol	42.1	42.28
KRH76105	Soybean	cytosol, plastid	42.25	40.74
KRH65448	Soybean	plastid	28.8	39.96
Os02t0234300-01	Rice	cytosol	28.95	33.73
Os02t0488600-01	Rice	cytosol, nucleus	18.91	30.26
Os12t0570000-01	Rice	cytosol	22.16	29.01
Os06t0102700-01	Rice	plasma membrane	25.7	28.81
Os07t0587500-01	Rice	cytosol	15.07	28.18
Os04t0348400-01	Rice	cytosol	18.61	27.45
Os02t0732200-01	Rice	cytosol	25.11	26.69
Os09t0378700-00	Rice	plasma membrane, plastid	27.62	26.26
Os08t0415600-00	Rice	cytosol	27.62	26.08
Os03t0275900-01	Rice	cytosol	27.92	26.03
Os08t0481200-01	Rice	cytosol	24.37	25.7
Os06t0726900-00	Rice	cytosol	14.33	25.53
Os03t0435300-00	Rice	cytosol	14.77	25.0
Os07t0584900-01	Rice	plastid	15.8	22.91
Os08t0110500-01	Rice	plasma membrane	24.96	20.51
Os01t0884400-01	Rice	plasma membrane	23.93	19.33

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4339101	ProteinID:AAT01358.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:BAF17751.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlantsGene:Os05g0476700	EnsemblPlants:Os05t0476700-01	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	UniProt:Q75GN8	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000035ACE5	InterPro:Ubox_domain	RefSeq:XP_015637531.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

arm repeat protein, plant U-box-containing protein 2, U-box protein 2U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os05t0476700-01)

Coordinates

chr5:+:23463142..23465536

Molecular Weight (calculated)

72461.8 Da

IEP (calculated)

6.282

GRAVY (calculated)

-0.021

Length

677 amino acids

Sequence
(BLAST)

001: MANARNAAAA SPPPPSSSSS YSSSASDGEI LRSLHRLARD LAAAEAPAPF LETVFAAVSR RAKLLAAVFD DLLRCGRLPR SASLCLREVL LVLQRFKAVV
101: ADCSARSRMR LLLQADEVAA RVRELQHDLA TLLDLLPVPE LGLADDVVDL LALASRQCRR SSPSADAAEH ELKTGVLALI QEVEREIVPE RERLEGILEE
201: VGINDPACCS DEIETLEREI GDRVAERWTS AMIALVGLLR YAKCVLFTAA TPRPMDTKVD VDDDDDDDDA EPPSPPPDFR CPISLDLMRD PVVSASGQTY
301: DRESITRWFG SGKSTCPKTG QVLANLELVP NKALKNLISR WCRENGVAME SSEPSKPEPA PVVTANKAAL EAARMTASFL VKKLSVSFSP AAANRVVHEI
401: RQLARSGNDT RAFIGEAGAV PLLVPLLHSD DTATQLNAVT ALLNLSILDA NKKRIMHAEG AVEAICHAMG SGATWRAKEN AAATVLSLAS VHSYRRRLGR
501: NPRVVERVVH LVRTGPSSTK KDAIAALLCL SGERENVGKL VEAGAAEAAL SAISEEETAV AVLASLAKRG GAEAIVNIDG AVVRLVAELR RGTEWSRECA
601: AAALVLLCRR VGAAVVAQVM SVSGVEWAIW ELMATGTERA RRKAASLGRA CRRWAAAEQT AEYPATSDVT TTAITAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.