Factsheet for VIT_08s0058g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071349	Potato	plastid	67.95	66.47
Solyc09g018230.1.1	Tomato	plastid	67.36	66.28
KRH76105	Soybean	cytosol, plastid	61.6	59.4
Bra001998.1-P	Field mustard	cytosol	51.99	58.96
AT5G01830.1	Thale cress	plastid	58.49	58.75
CDY31406	Canola	cytosol	57.9	58.16
CDX71307	Canola	cytosol	57.75	58.1
Bra019022.1-P	Field mustard	cytosol	57.75	58.01
KRH65448	Soybean	plastid	41.36	57.38
GSMUA_Achr8P25140_001	Banana	plastid	33.09	53.33
GSMUA_Achr4P00200_001	Banana	plastid	47.56	45.74
GSMUA_Achr7P22130_001	Banana	cytosol	42.69	45.66
Os01t0823900-01	Rice	plastid	44.46	44.26
Zm00001d043043_P001	Maize	cytosol	42.98	43.89
Zm00001d012494_P001	Maize	cytosol	42.98	43.89
TraesCS1A01G300000.1	Wheat	cytosol	43.13	43.71
TraesCS1B01G310100.1	Wheat	plastid	43.13	43.32
Os05t0476700-01	Rice	plastid	43.13	43.13
TraesCS1D01G299400.1	Wheat	cytosol, plastid	42.39	43.03
TraesCS3A01G345800.1	Wheat	plastid	43.28	42.9
HORVU3Hr1G081300.1	Barley	plastid	43.57	42.88
HORVU1Hr1G069990.1	Barley	plastid	43.13	42.82
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	42.25	42.69
TraesCS3B01G377600.1	Wheat	plastid	43.28	42.65
OQU78182	Sorghum	plastid	42.69	42.56
TraesCS3D01G339600.1	Wheat	plastid	43.28	42.53
KXG33626	Sorghum	plastid	43.43	41.88
VIT_13s0067g01460.t01	Wine grape	cytosol	35.01	34.45
VIT_10s0003g01730.t01	Wine grape	mitochondrion	36.63	34.16
VIT_13s0019g04710.t01	Wine grape	cytosol	30.28	32.64
VIT_00s0524g00030.t01	Wine grape	cytosol	20.09	30.29
VIT_04s0043g00840.t01	Wine grape	cytosol	20.24	30.11
VIT_06s0004g04530.t01	Wine grape	cytosol	29.99	29.77
VIT_01s0011g04770.t01	Wine grape	cytosol	27.33	28.95
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	28.36	28.28
VIT_01s0026g00190.t01	Wine grape	cytosol	27.77	27.53
VIT_03s0038g03660.t01	Wine grape	cytosol	25.55	26.99
VIT_18s0001g14180.t01	Wine grape	cytosol	26.59	26.32
VIT_18s0001g09130.t01	Wine grape	cytosol	13.0	22.68
VIT_07s0005g03520.t01	Wine grape	cytosol	24.96	21.47
VIT_07s0129g00590.t01	Wine grape	cytosol	25.55	20.4
VIT_00s2269g00010.t01	Wine grape	plastid	13.44	20.13

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100256780	wikigene:100256780	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM487878
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CAN71048	ProteinID:CAN71048.1	ProteinID:CCB44780
ProteinID:CCB44780.1	ncoils:Coil	UniProt:F6GXX9	EMBL:FN594967	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009987	GO:GO:0010200	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100256780	wikigene:LOC100256780	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00015CB35B	InterPro:Ubox_domain	ArrayExpress:VIT_08s0058g01100
EnsemblPlantsGene:VIT_08s0058g01100	EnsemblPlants:VIT_08s0058g01100.t01	RefSeq:XP_002266747	RefSeq:XP_002266747.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GXX9]

Coordinates

chr8:+:10460503..10462965

Molecular Weight (calculated)

74614.7 Da

IEP (calculated)

8.419

GRAVY (calculated)

-0.047

Length

677 amino acids

Sequence
(BLAST)

001: MAISPQNFPR KRRPSAGSFI SPTLSDRRLV QSLLLVSQEI SSLAPLQFLL KRNSVSIIRK SNLLAFLFEE LLRNPVSCFA PTAILCFEEM YIVLQRMKTL
101: IEDCSNGSRT WLLMQNESVS NGFHELTLDL STLLDIIPVK GLDLVEDIEE LVLLIRKQCS ETAAYVDPTD ETLRRDLLKM LDQIKREIVP DHKKLAEIFE
201: KLDLQDSASC SDEIKSLEEE FQNQRDDKSK SEVTALIGLV RYAKCVLFGA STPKSHGRRQ KSMTDTIIPA DFRCPITLDL MRDPVVVATG QTYDRTSINR
301: WIESGHNMCP KTGQILAHTN LIQNRALRNL IILWCREQEI PFQTTEVNDK VKAATQNKTL FGATKMTVLF LINKLTDSES VEATNRVVHE LRVLAKTDSE
401: SRACIAEAGA IPLLVRFLGS DNPSLQVNAV TTLLNLSILE ANKTRIMEID GALNGVIEVL RSGATWEAKG NAAATIFSLA GVQSYRKRLG KKTRVIKGLM
501: DLAKGGPASS RRDALVAILS LAGERDTVGR LIEGGVVEMV IEVMAASPEE AEEAVTVLEV VVRRGGLVAV AAAYHAIKKL SVVLRSGSDR ARESAAATLV
601: NICRKGGSET VAALAAMPGI ERVIWELMGT GTERCRRKAA SLLRMLRRWA AGLDEDVPTT TGHSTTVTTT SRPVLHS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.