Factsheet for VIT_01s0026g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082693	Potato	cytosol	22.99	64.34
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	50.07	61.07
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	58.13	57.96
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	56.22	56.55
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	37.63	56.48
KRH69547	Soybean	cytosol, plastid	54.32	52.03
CDY24520	Canola	cytosol	44.22	44.81
Bra031521.1-P	Field mustard	cytosol	43.92	44.31
GSMUA_Achr9P14560_001	Banana	cytosol	37.92	44.27
AT1G10560.1	Thale cress	cytosol	45.1	44.19
AT1G60190.1	Thale cress	cytosol, plastid	44.36	44.17
CDY55050	Canola	cytosol	44.66	43.82
Bra019924.1-P	Field mustard	mitochondrion	44.51	43.74
CDY54132	Canola	cytosol	43.48	43.68
CDX93411	Canola	mitochondrion	44.36	43.41
GSMUA_Achr3P06160_001	Banana	plastid	34.11	41.09
CDY04344	Canola	cytosol	19.18	41.07
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	40.56	40.09
TraesCS2B01G499300.1	Wheat	plasma membrane	40.41	40.06
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	40.12	39.77
Zm00001d020332_P001	Maize	cytosol	40.26	39.4
CDY04342	Canola	cytosol	19.18	39.34
Os09t0378700-00	Rice	plasma membrane, plastid	41.0	39.33
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	39.82	38.8
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	39.24	38.62
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	39.53	38.52
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	39.53	38.52
KXG35540	Sorghum	plasma membrane	40.26	38.41
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	39.39	38.37
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	39.82	38.1
Os08t0415600-00	Rice	cytosol	37.77	35.98
VIT_10s0003g01730.t01	Wine grape	mitochondrion	32.94	30.99
VIT_13s0067g01460.t01	Wine grape	cytosol	30.31	30.09
VIT_13s0019g04710.t01	Wine grape	cytosol	26.65	28.98
VIT_08s0058g01100.t01	Wine grape	plastid	27.53	27.77
VIT_06s0004g04530.t01	Wine grape	cytosol	27.67	27.71
VIT_00s0524g00030.t01	Wine grape	cytosol	18.01	27.39
VIT_01s0011g04770.t01	Wine grape	cytosol	25.33	27.07
VIT_04s0043g00840.t01	Wine grape	cytosol	18.01	27.03
VIT_03s0038g03660.t01	Wine grape	cytosol	23.57	25.12
VIT_18s0001g14180.t01	Wine grape	cytosol	24.45	24.42
VIT_18s0001g09130.t01	Wine grape	cytosol	13.32	23.45
VIT_00s2269g00010.t01	Wine grape	plastid	14.35	21.68
VIT_07s0005g03520.t01	Wine grape	cytosol	23.72	20.58
VIT_07s0129g00590.t01	Wine grape	cytosol	24.16	19.46

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100243339	wikigene:100243339	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ProteinID:CBI32136	ProteinID:CBI32136.3	UniProt:D7TNR3	EMBL:FN596002
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100243339	wikigene:LOC100243339	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00015CAB55	InterPro:Ubox_domain	ArrayExpress:VIT_01s0026g00190
EnsemblPlantsGene:VIT_01s0026g00190	EnsemblPlants:VIT_01s0026g00190.t01	RefSeq:XP_002264637	RefSeq:XP_002264637.2	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TNR3]

Coordinates

chr1:-:8823958..8826187

Molecular Weight (calculated)

75457.0 Da

IEP (calculated)

6.962

GRAVY (calculated)

0.097

Length

683 amino acids

Sequence
(BLAST)

001: MTHKIHASPR RILTFPAVHP CDAVAPATLL ASLVNLATTI CGYKSKFFAA NKRNTRELIR QIGILLVFLE EILDRRLDLP ASAVLSFSEL HVTLQKIVYL
101: LEDCSFGGAR LLMLMKSERV SNHLRILIRA TATALDVLPL ELIDVSDEVK ESVELTMRQA RRVRFEVEAD DERASKDVLL ILDGFEDGVV PDRGDIRRVL
201: DYVGIRSWSE CNKEVKFLDT ELGLEWSNME KREVAFLSSL MGFMSYCRFA LFDVVDGEAG QQLDKECSSD VLNCLNPDDF RCPITLELMT DPVTIETGHT
301: YERSSILKWF RAGNPICPKT GEKVVSMDVV PNMALQRLIQ QYCSANGIPI SEPGHRNHDI TRTVLAGSLA AEGAMKVMAN FLAGRLAAGT SGERNKAAYE
401: IRLLAKTNIF NRYCLAEAGT IPRLLHLLSS GDSSSQHNAI AALLNLSKYS KSKTIMAENG GLELIVGVLR KGLKIEVREL AAATLYYLAS VEEYRKLIGE
501: IPEAFPALLE LIKTRTDRGK KNALVAIFGL LTFPDNHWRV LASGAVPLLV NLLTSSERED LVTASLAVLA TLAEKLDGTI TILGTGALHL ILQILNSSPS
601: RPGIEYCVSL LLALCINGGK EVVSVLVKNP SLMGSLYSLL TEDNSRASKK ARSLIRILHE FCERRASGLV TPAFPEERYV DVW

Best Arabidopsis Sequence Match ( AT1G60190.1 )
(BLAST)

001: MIHTPTGSSR RILTFPAVNP CESISLTTLV DSLLQLAGEI LSFKPKHFST NKRSVKETLR HVQTLVIFFE ELRIQIRVGS IPAGRSVILS LSELHVIFQK
101: LKFLLDDCTR DGAKLYMLMN SGQVSAHFRD LTRSISTSLD TFPVRSVDLP GEVNELIYLV MRQTRKSEAR PDRDDKRAID SVYWFFNLFE NRINPNSDEI
201: LRVLDHIGVR KWRDCVKEID FLREEISVGK KSNIEIELLS NLMGFICYCR CVILRGIDVD DEEKDKEEDD LMMVRSLNVD DLRCPISLEI MSDPVVLESG
301: HTYDRSSITK WFASGNITCP KTGKTLVSTV LVDNFSVKQV IQSYSKQNGV VMGQKGKKKV DVAESLAAEE AGKLTAEFLA GELIKGDEEE MVKALVEIRI
401: LTKTSTFYRS CLVEAGVVES LMKILRSDDP RIQENAMAGI MNLSKDIAGK TRIVGEDGGG LRLIVEVLND GARRESRQYA AAALFYLSSL GDYSRLIGEI
501: SDAIPGLVRI VKSCDYGDSA KRNALIAIRS LLMNQPDNHW RILAAGIVPV LLDLVKSEEI SDGVTADSMA ILAKMAEYPD GMISVLRRGG LKLAVKILGS
601: SEVSPATKQH CVALLLNLCH NGGSDVVGSL AKNPSIMGSL YTASSNGELG GGKKASALIK MIHEFQERKT GPGEPVLERE RFVHAW

Arabidopsis Description

PUB19U-box domain-containing protein 19 [Source:UniProtKB/Swiss-Prot;Acc:O80742]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.