Factsheet for Bra019924.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93411	Canola	mitochondrion	97.99	97.56
AT1G10560.1	Thale cress	cytosol	78.27	78.05
Bra031521.1-P	Field mustard	cytosol	60.0	61.6
PGSC0003DMT400082693	Potato	cytosol	16.55	47.13
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	29.35	44.84
VIT_01s0026g00190.t01	Wine grape	cytosol	43.74	44.51
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	34.39	42.68
KRH69547	Soybean	cytosol, plastid	43.6	42.5
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	41.73	42.34
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	36.83	36.89
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	36.55	36.76
TraesCS2B01G499300.1	Wheat	plasma membrane	35.68	35.99
TraesCS2D01G475600.1	Wheat	cytosol, plasma membrane	35.54	35.85
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	36.12	35.15
GSMUA_Achr9P14560_001	Banana	cytosol	29.5	35.04
Os09t0378700-00	Rice	plasma membrane, plastid	35.68	34.83
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	35.11	34.81
TraesCS5D01G204700.1	Wheat	cytosol, plasma membrane	35.11	34.81
HORVU5Hr1G059280.1	Barley	cytosol, plasma membrane	34.96	34.66
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	34.96	34.66
Zm00001d020332_P001	Maize	cytosol	34.53	34.38
KXG35540	Sorghum	plasma membrane	34.68	33.66
Os08t0415600-00	Rice	cytosol	34.68	33.61
GSMUA_Achr3P06160_001	Banana	plastid	25.9	31.75
Bra040513.1-P	Field mustard	cytosol	10.79	28.52
Bra012355.1-P	Field mustard	plasma membrane	22.59	26.7
Bra018212.1-P	Field mustard	cytosol	24.46	26.11
Bra024559.1-P	Field mustard	cytosol, plasma membrane	22.88	26.11
Bra033820.1-P	Field mustard	cytosol	24.03	25.38
Bra016165.1-P	Field mustard	cytosol, plasma membrane	22.3	25.16
Bra021899.1-P	Field mustard	plastid	23.6	24.81
Bra040374.1-P	Field mustard	cytosol	15.97	24.61
Bra001247.1-P	Field mustard	cytosol	16.12	24.56
Bra010834.1-P	Field mustard	mitochondrion	25.32	24.48
Bra032309.1-P	Field mustard	plastid	24.6	24.29
Bra035665.1-P	Field mustard	cytosol	22.45	23.93
Bra029642.1-P	Field mustard	cytosol	15.83	23.81
Bra007105.1-P	Field mustard	cytosol	21.44	23.5
Bra001006.1-P	Field mustard	plastid	11.94	23.45
Bra019022.1-P	Field mustard	cytosol	22.59	23.29
Bra001998.1-P	Field mustard	cytosol	20.0	23.28
Bra027977.1-P	Field mustard	cytosol	21.01	22.39
Bra020360.1-P	Field mustard	cytosol	11.37	22.38
Bra006451.1-P	Field mustard	cytosol	13.96	20.77
Bra007097.1-P	Field mustard	cytosol	20.29	20.09
Bra014787.1-P	Field mustard	cytosol	20.86	19.65
Bra032180.1-P	Field mustard	cytosol	16.4	19.52
Bra037117.1-P	Field mustard	cytosol, plastid	20.0	18.94
Bra012155.1-P	Field mustard	cytosol	17.27	18.21
Bra038470.1-P	Field mustard	plastid	12.23	18.16
Bra012713.1-P	Field mustard	cytosol	11.65	17.8
Bra002153.1-P	Field mustard	cytosol	14.53	7.39
Bra006452.1-P	Field mustard	cytosol	14.68	6.14

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra019924	EnsemblPlants:Bra019924.1	EnsemblPlants:Bra019924.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009787	GO:GO:0009791
GO:GO:0009987	GO:GO:0010029	GO:GO:0010119	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0061630	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4DTT1
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF116
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000253EA21	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT1G10560 (E=3e-294) PUB18, ATPUB18 | PUB18 (PLANT U-BOX 18); ubiquitin-protein ligase

Coordinates

chrA06:+:3689177..3691264

Molecular Weight (calculated)

76490.4 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.046

Length

695 amino acids

Sequence
(BLAST)

001: MIHSKTGFSR RILTFPAVQP CKSISVTTLL DSLIQLAGDI LTFKQKHFST NKRSFQKTIR QIQNLAIVLE EIRIRVGSPR RYFPGVSSLS EIHVIFQKLK
101: FLLEDCTRDG ARVCMLMSSD QVSDHLQVLT LSISTSLSSF PVSFVDLPSE VNELIDLVVQ QARKHVVRPD SDDKKVIDSV NQVLALFENR VSPDPDEINR
201: ILDHVGIRTW GDCVKEVNFL GEEIEAERLE NKKKNNNSNN ARVELLSSLM GFICYCRCVI LNKRDHHLHR DESELRVHED LFRGIKVEDL LCPISLEIMT
301: DPVVIETGHT YDRSSITKWF GSGNITCPKT GKILTSTELV NNVSVSHVIQ KHCRANGVVL AINSRKRKSH GDVAPDSLAA KGAGRLIARF LTSELITNGD
401: EETVYRALRE IRVLTKTGSF NRSCLVEAGC VSPLINLLAS EDSRIQENAM AALLNLSKHA AGKGEIAGEG LGLIVEILNE GDKTETRLYA ASALFYLSSV
501: EDYSLLIGEN ADAIPGLMRI VTGDEFGDSA KRNALLAVMG LLMQPENHWR VLAAGAVPAL LDLLRDEETG GELTADCLAT LAKLAEYPDG TIGVIRRGGL
601: KLAVKILSSS EASPAVKQHC VGLVLNLCLN AGNDVVGVLV KDSVVMGSLY TVISNGEYGG SKKASALIRM IHEYQERKTG SVEPSFQRGR FIHAW

Best Arabidopsis Sequence Match ( AT1G10560.1 )
(BLAST)

001: MIHTKTGSGR RILTFPTVEP SESISIVTLL DSLIQLAGDI LTFKSKHFST NKQSFRETLR RIQNLLVVFE EIRIRIRNSR RYFHDSAAAS SLKEIHVGFQ
101: KLKFLLEDCT RDGARLCMMM NSDQVSDHLR VLTRSISTSL SAFPVASVDL TTEVNELIDL VVRQARKYGV QPETNDKRAV SSINRILALF VNRVVPDPDE
201: INRILDHVGI RKWGDCVKEI NFLGEEIDAE RLDEKKKKSS DQVELLSSLM GFICYCRCII LGRIERDDHH NHHEDGIKKD HDLIRGLKVE DLLCPISLEI
301: MTDPVVIETG HTYDRSSITK WFGSGNITCP ITGKILTSTE LVDNVSVRQV IRKHCKTNGI VLAGISRRRK SHDDVVPESL AAKGAGKLIA KFLTSELING
401: GEEMIYRAVR EIRVQTKTSS FNRSCLVKAG AVTPLLKLLS SVDIRIQENA MAGILNLSKH VTGKSKIAGE GLKILVEILN EGAKTETRLY SASALFYLSS
501: VEDYSRLIGE NPDAIPGLMN IVKGDDYGDS AKRSALLAVM GLLMQSDNHW RVLAAGAVPI LLDLLRSGEI SGGLTADCLA TLAKLAEYPD GTIGVIRRGG
601: LKLAVKILSS SEDSPVAVKQ HCVGLILNLC LNGGRDVVGV LVKNSLVMGS LYTVLSNGEY GGSKKASALI RMIHEFQERK TGSVEPNLQR GRFVHAW

Arabidopsis Description

PUB18U-box domain-containing protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIJ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.