Factsheet for Bra007097.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78262	Canola	cytosol	98.29	98.29
Bra014787.1-P	Field mustard	cytosol	87.18	82.93
AT3G54790.1	Thale cress	cytosol	86.18	79.61
VIT_07s0005g03520.t01	Wine grape	cytosol	57.69	51.46
Bra040513.1-P	Field mustard	cytosol	18.09	48.29
GSMUA_Achr6P36530_001	Banana	cytosol	43.59	46.36
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.7	46.31
PGSC0003DMT400026700	Potato	cytosol	50.85	45.89
Solyc09g025270.2.1	Tomato	cytosol	48.72	45.66
KRH67390	Soybean	cytosol, plastid	52.85	43.34
GSMUA_Achr5P21360_001	Banana	cytosol	46.44	42.95
Bra001006.1-P	Field mustard	plastid	20.51	40.68
Bra020360.1-P	Field mustard	cytosol	20.23	40.23
KRH32190	Soybean	cytosol	36.89	39.06
Bra037117.1-P	Field mustard	cytosol, plastid	40.17	38.42
Bra012155.1-P	Field mustard	cytosol	33.9	36.12
Bra012713.1-P	Field mustard	cytosol	21.37	32.97
Bra007105.1-P	Field mustard	cytosol	29.49	32.65
Bra032180.1-P	Field mustard	cytosol	26.5	31.85
Bra040374.1-P	Field mustard	cytosol	20.23	31.49
Bra038470.1-P	Field mustard	plastid	20.94	31.41
Bra018212.1-P	Field mustard	cytosol	28.92	31.18
Bra001247.1-P	Field mustard	cytosol	20.23	31.14
Bra035665.1-P	Field mustard	cytosol	28.92	31.14
Bra012355.1-P	Field mustard	plasma membrane	26.07	31.12
Bra033820.1-P	Field mustard	cytosol	29.06	31.0
Bra029642.1-P	Field mustard	cytosol	20.23	30.74
Bra024559.1-P	Field mustard	cytosol, plasma membrane	25.78	29.72
Bra016165.1-P	Field mustard	cytosol, plasma membrane	25.93	29.55
Bra027977.1-P	Field mustard	cytosol	27.21	29.29
Bra006451.1-P	Field mustard	cytosol	15.81	23.77
Bra032309.1-P	Field mustard	plastid	23.65	23.58
Bra001998.1-P	Field mustard	cytosol	19.94	23.45
Bra010834.1-P	Field mustard	mitochondrion	23.5	22.95
Bra021899.1-P	Field mustard	plastid	21.51	22.84
Bra019022.1-P	Field mustard	cytosol	21.37	22.26
Bra019924.1-P	Field mustard	mitochondrion	20.09	20.29
Bra031521.1-P	Field mustard	cytosol	19.09	19.79
Bra002153.1-P	Field mustard	cytosol	18.09	9.3
Bra006452.1-P	Field mustard	cytosol	16.67	7.04

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra007097	EnsemblPlants:Bra007097.1	EnsemblPlants:Bra007097.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4CSA5	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002542936	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G54790 (E=6e-145) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA09:-:27292695..27295103

Molecular Weight (calculated)

77152.6 Da

IEP (calculated)

5.910

GRAVY (calculated)

-0.144

Length

702 amino acids

Sequence
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACHTIRYSPI QTRIGNVVHL LKLLKPFLVE VVDCKTPPDD GCLNSACEDL DSVVNQAREF LEDWSPKLSK LFGVFHCELL
101: LEKVQTCSLK ITGILLQLSQ SSAVTLSLQG VERCMQEIEC FKQENTLTEH MNNALQNQTD DNDDLDSIIQ MIGLVSNQDL LKESIAVEKE QMDQLIDLVS
201: CIREHMLKTE FLEVAKGIST PPYFRCPLST ELMVDPVIVA SGQTFDRTSI KTWLDNGLAV CPRTRQVLTH QELIPNYTVK AMIESWLEAN NITLAVNSGG
301: DDSSVANNMG SNDFNRTESF RFSLRSSSFT SRSSVEAGNG FEKVKINVPA SLSKELEIFE LSSQEQSYTH SRSESVCSVV SSVDYVPSVT SETQSLPVNH
401: QSYSEMSSGT MMTSHTIKLV EDLKNGSNKE KTDAAAEIRR LTINSVENRV HFGRCGAITP LLSLLYSEEK LTQEQAVTAL LNLSLSEVNK GMIVEAGAIE
501: PLVHVLKAGN DRAKENSAAT LFSLSVVQVN RERIGQCNAA IHALVSLLGK GTLRGKKDAA SALFNLSITH ENKARIVQAK AVKYLVEMLD PDLEMVDKAV
601: ALLANLSGVG EGRQEIVREG GVPLLVETVD SGSGRGKENA ASVLLQLCLN SPKFCTLVLQ EGAIPPLVAL SQSGTQRAKE KAQQLLSHFR NQRDARMKKG
701: RS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.