Factsheet for Bra035665.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31736	Canola	cytosol	97.55	99.07
AT2G28830.1	Thale cress	endoplasmic reticulum	70.86	79.38
Solyc11g066040.1.1	Tomato	cytosol	62.88	61.84
PGSC0003DMT400001049	Potato	cytosol	62.27	61.14
VIT_06s0004g04530.t01	Wine grape	cytosol	63.19	60.41
Bra018212.1-P	Field mustard	cytosol	59.82	59.91
Solyc06g076040.2.1	Tomato	cytosol	59.82	59.0
Bra033820.1-P	Field mustard	cytosol	59.36	58.81
PGSC0003DMT400078166	Potato	cytosol	59.51	58.7
Os12t0570000-01	Rice	cytosol	45.71	57.64
Zm00001d030732_P001	Maize	cytosol	54.29	53.23
OQU79384	Sorghum	cytosol	54.29	53.15
Zm00001d041548_P002	Maize	cytosol	54.45	52.83
HORVU5Hr1G021270.1	Barley	cytosol	55.06	52.64
TraesCS5A01G078400.1	Wheat	cytosol	55.21	52.63
TraesCS5B01G087500.1	Wheat	cytosol	54.91	52.49
TraesCS5D01G093700.1	Wheat	cytosol	54.75	52.19
HORVU5Hr1G021280.1	Barley	cytosol	55.06	52.18
GSMUA_Achr10P...	Banana	cytosol	49.85	51.92
TraesCS4A01G097700.1	Wheat	cytosol	55.83	50.91
GSMUA_Achr5P28670_001	Banana	cytosol	44.02	50.35
Zm00001d028623_P001	Maize	cytosol	55.37	49.72
Os03t0275900-01	Rice	cytosol	54.75	49.17
GSMUA_Achr5P07140_001	Banana	cytosol	47.09	48.89
Bra007105.1-P	Field mustard	cytosol	46.78	48.11
GSMUA_Achr6P34170_001	Banana	cytosol	48.62	47.74
OQU92820	Sorghum	cytosol	54.75	47.66
TraesCS4B01G206900.1	Wheat	plastid	55.83	47.52
HORVU4Hr1G059610.2	Barley	cytosol	56.13	47.41
TraesCS4D01G207700.2	Wheat	plastid	55.67	46.72
Bra040513.1-P	Field mustard	cytosol	17.02	42.21
Bra024559.1-P	Field mustard	cytosol, plasma membrane	39.26	42.04
Bra012355.1-P	Field mustard	plasma membrane	37.88	42.01
Bra016165.1-P	Field mustard	cytosol, plasma membrane	38.34	40.58
GSMUA_Achr10P...	Banana	cytosol	53.07	40.05
Bra027977.1-P	Field mustard	cytosol	37.88	37.88
Bra001247.1-P	Field mustard	cytosol	24.23	34.65
Bra040374.1-P	Field mustard	cytosol	23.93	34.59
Bra029642.1-P	Field mustard	cytosol	24.39	34.42
Bra020360.1-P	Field mustard	cytosol	17.94	33.14
Bra001006.1-P	Field mustard	plastid	17.79	32.77
Bra007097.1-P	Field mustard	cytosol	31.14	28.92
Bra010834.1-P	Field mustard	mitochondrion	31.6	28.65
Bra001998.1-P	Field mustard	cytosol	26.23	28.64
Bra014787.1-P	Field mustard	cytosol	32.06	28.32
Bra021899.1-P	Field mustard	plastid	28.37	27.99
Bra037117.1-P	Field mustard	cytosol, plastid	31.14	27.66
Bra032309.1-P	Field mustard	plastid	29.6	27.41
Bra019022.1-P	Field mustard	cytosol	27.76	26.85
Bra012713.1-P	Field mustard	cytosol	18.71	26.81
Bra038470.1-P	Field mustard	plastid	19.17	26.71
Bra012155.1-P	Field mustard	cytosol	26.38	26.1
Bra032180.1-P	Field mustard	cytosol	22.55	25.17
Bra006451.1-P	Field mustard	cytosol	17.94	25.05
Bra019924.1-P	Field mustard	mitochondrion	23.93	22.45
Bra031521.1-P	Field mustard	cytosol	23.01	22.16
Bra002153.1-P	Field mustard	cytosol	21.78	10.4
Bra006452.1-P	Field mustard	cytosol	19.17	7.53

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	EnsemblPlantsGene:Bra035665	EnsemblPlants:Bra035665.1	EnsemblPlants:Bra035665.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	InterPro:IPR036537	UniProt:M4F3L5	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000254404A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT2G28830 (E=2e-261) | binding / structural constituent of ribosome / ubiquitin-protein ligase

Coordinates

chrA04:-:12973945..12976703

Molecular Weight (calculated)

71815.9 Da

IEP (calculated)

6.073

GRAVY (calculated)

-0.223

Length

652 amino acids

Sequence
(BLAST)

001: MAKTELAKIL IESVKEIASI SDHRPPMKTH CAHLSRRLKL LLPMLEEIRD CKNSLPEESM MKALLSLRES LLHAKDLLIY ISQLSKIYLV LERDQVMVRF
101: QKVTALLEQA LSEIPYQSLE ISDELQEQVE LVLVQLRRSI GKGGGEKYDD ELYKDLLSLY DGATDSEILR RVAEKLQLMT VTDLTEESLA LLDMLSTSGG
201: DDPGESFEKM MMLLKNIKDF VQTYNPNLED VPLRSKPSLS KAQDEDQKNV PEDFRCPISH KLMSDPVIVS SGQTYDRECI KKWLDDGNST CPKTQVKLTI
301: DIVTPNYALR SLIAQWCESN GIEPPKRPNN PQPSSKASSS SSSSSFSPPS DEQLKIEALL CKLTSQRPEE QRSAAGEIRL LAKQNNHNRV VLAASGAIPL
401: LVSLLTNSDD PRTQEHAVTS ILNLSIFQEN KGRIISTFGA VPGIVHVLKK GSMEARENAA ATLFSLSVID ENKMTIGAAG AIPPLVNLLS EGSQRGKKDA
501: GTALFNLCIF QGNKGKAVRA GLVPVLMRLL TEPEGRMVDE ALAILAILSS HPEGKVVVGA ADAVPFMVDF IRSGSPRNKE NAAAVLVQLC SWDPQHLIEA
601: EKLGVMGCLI EMAENGTDRG KRKAAQLLNR FSRFNEQQKQ SGLGVEGQVS LI

Best Arabidopsis Sequence Match ( AT2G28830.1 )
(BLAST)

001: MLRICFLSLA MLAKFTWCVL ERDQVMVKFQ KVTSLLEQAL SIIPYENLEI SDELKEQVEL VLVQLRRSLG KRGGDVYDDE LYKDVLSLYS GRGSVMESDM
101: VRRVAEKLQL MTITDLTQES LALLDMVSSS GGDDPGESFE KMSMVLKKIK DFVQTYNPNL DDAPLRLKSS LPKSRDDDRD MLIPPEEFRC PISLELMTDP
201: VIVSSGQTYE RECIKKWLEG GHLTCPKTQE TLTSDIMTPN YVLRSLIAQW CESNGIEPPK RPNISQPSSK ASSSSSAPDD EHNKIEELLL KLTSQQPEDR
301: RSAAGEIRLL AKQNNHNRVA IAASGAIPLL VNLLTISNDS RTQEHAVTSI LNLSICQENK GKIVYSSGAV PGIVHVLQKG SMEARENAAA TLFSLSVIDE
401: NKVTIGAAGA IPPLVTLLSE GSQRGKKDAA TALFNLCIFQ GNKGKAVRAG LVPVLMRLLT EPESGMVDES LSILAILSSH PDGKSEVGAA DAVPVLVDFI
501: RSGSPRNKEN SAAVLVHLCS WNQQHLIEAQ KLGIMDLLIE MAENGTDRGK RKAAQLLNRF SRFNDQQKQH SGLGLEDQIS LI

Arabidopsis Description

PUB12PLANT U-BOX 12 [Source:TAIR;Acc:AT2G28830]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.