Factsheet for Bra033820.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68379	Canola	cytosol	99.24	99.24
Bra018212.1-P	Field mustard	cytosol	91.79	92.78
AT3G46510.1	Thale cress	cytosol	93.01	92.73
VIT_06s0004g04530.t01	Wine grape	cytosol	71.43	68.92
KRH29807	Soybean	cytosol	69.0	68.68
Solyc11g066040.1.1	Tomato	cytosol	69.0	68.48
PGSC0003DMT400001049	Potato	cytosol	68.39	67.77
KRH24807	Soybean	cytosol	68.09	67.67
PGSC0003DMT400078166	Potato	cytosol	65.96	65.66
Solyc06g076040.2.1	Tomato	cytosol	65.35	65.05
Bra035665.1-P	Field mustard	cytosol	58.81	59.36
Os12t0570000-01	Rice	cytosol	45.44	57.83
GSMUA_Achr5P28670_001	Banana	cytosol	47.11	54.39
GSMUA_Achr10P...	Banana	cytosol	51.67	54.31
Zm00001d030732_P001	Maize	cytosol	54.56	53.98
OQU79384	Sorghum	cytosol	54.41	53.75
Zm00001d041548_P002	Maize	cytosol	54.26	53.12
HORVU5Hr1G021270.1	Barley	cytosol	54.71	52.79
TraesCS5B01G087500.1	Wheat	cytosol	54.41	52.49
TraesCS5A01G078400.1	Wheat	cytosol	54.56	52.49
HORVU5Hr1G021280.1	Barley	cytosol	54.71	52.33
TraesCS5D01G093700.1	Wheat	cytosol	54.26	52.19
GSMUA_Achr5P07140_001	Banana	cytosol	49.24	51.59
Bra007105.1-P	Field mustard	cytosol	49.39	51.26
TraesCS4A01G097700.1	Wheat	cytosol	55.02	50.63
GSMUA_Achr6P34170_001	Banana	cytosol	51.06	50.6
Zm00001d028623_P001	Maize	cytosol	55.47	50.28
Os03t0275900-01	Rice	cytosol	53.65	48.62
OQU92820	Sorghum	cytosol	54.41	47.8
TraesCS4B01G206900.1	Wheat	plastid	54.86	47.13
HORVU4Hr1G059610.2	Barley	cytosol	55.17	47.02
TraesCS4D01G207700.2	Wheat	plastid	54.86	46.46
Bra012355.1-P	Field mustard	plasma membrane	39.82	44.56
Bra024559.1-P	Field mustard	cytosol, plasma membrane	40.73	44.01
Bra040513.1-P	Field mustard	cytosol	17.02	42.59
Bra016165.1-P	Field mustard	cytosol, plasma membrane	39.51	42.21
GSMUA_Achr10P...	Banana	cytosol	55.02	41.9
Bra027977.1-P	Field mustard	cytosol	38.75	39.11
Bra001006.1-P	Field mustard	plastid	18.39	34.18
Bra001247.1-P	Field mustard	cytosol	23.25	33.55
Bra029642.1-P	Field mustard	cytosol	23.56	33.55
Bra040374.1-P	Field mustard	cytosol	22.95	33.48
Bra020360.1-P	Field mustard	cytosol	17.78	33.14
Bra010834.1-P	Field mustard	mitochondrion	33.43	30.6
Bra032309.1-P	Field mustard	plastid	31.91	29.83
Bra037117.1-P	Field mustard	cytosol, plastid	33.13	29.7
Bra007097.1-P	Field mustard	cytosol	31.0	29.06
Bra014787.1-P	Field mustard	cytosol	31.46	28.05
Bra012155.1-P	Field mustard	cytosol	27.96	27.92
Bra021899.1-P	Field mustard	plastid	27.96	27.84
Bra012713.1-P	Field mustard	cytosol	19.15	27.69
Bra032180.1-P	Field mustard	cytosol	24.47	27.57
Bra038470.1-P	Field mustard	plastid	19.45	27.35
Bra001998.1-P	Field mustard	cytosol	24.62	27.14
Bra019022.1-P	Field mustard	cytosol	26.6	25.96
Bra006451.1-P	Field mustard	cytosol	18.24	25.7
Bra019924.1-P	Field mustard	mitochondrion	25.38	24.03
Bra031521.1-P	Field mustard	cytosol	23.86	23.19
Bra002153.1-P	Field mustard	cytosol	22.49	10.83
Bra006452.1-P	Field mustard	cytosol	20.21	8.01

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	EnsemblPlantsGene:Bra033820	EnsemblPlants:Bra033820.1	EnsemblPlants:Bra033820.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	UniProt:M4EYC8	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002543B84	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT3G46510 (E=0.0) PUB13, ATPUB13 | PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase

Coordinates

chrA01:-:13870245..13872520

Molecular Weight (calculated)

71445.4 Da

IEP (calculated)

4.848

GRAVY (calculated)

-0.224

Length

658 amino acids

Sequence
(BLAST)

001: MEEEKGAVAQ SLIDVVNEIS SVSEYRTTVK KLCSNLARRL KLLVPMFEEI RESNEPISED TLKTLVSLKE AMSSAKNHLK FCSQGSKIYL VMEREQVTSK
101: LLEVSVQLEQ SLSKIPYEDL DISDEVREQV ELVLSQFRRA KGRVDASDDE LYEDLQSLCI KSSDVDDYQP TLQRVARKLH LMEIPDLAQE SVALREMVAS
201: SGGESIEEMA MVLKLIKDFV QIDTDNSEDQ SAGVNSSSNG QTSTAASQKI PVIPDDFRCP ISLEMMRDPV IVSTGQTYER TCIEKWIEAG HSTCPKTQQA
301: LTSTTLTPNY VLRSLIAQWC EANDIEPPKP PSSLRPRKVS SFSSPAEANK IEDLMWRLAY GNPEDQRSAA GEIRLLAKRN ADNRVAIAEA GAIPLLVGLL
401: ATPDSRIQEH SVTALLNLSI CENNKGAIVS AGAIPGIVQV LKKGSMEARE NAAATLFSLS VIDENKVTIG ALGAIPPLVV LLNEGTQRGK KDAATALFNL
501: CIYQGNKGKA IRAGVIPTLT RLLTEPGSGM VDEALAILAI LSSHPEGKAI IGSSDAVPSL VEFIRTGSPR NRENAAAVLV HLCSVDPQHL VEAQKLGLMG
601: PLIDLAGNGT DRGKRKAAQL LERISRLAEQ QKETAAQAQN TEEAEPTHSA STTEAADT

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.