Factsheet for Solyc11g066040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001049	Potato	cytosol	97.59	97.44
Solyc06g076040.2.1	Tomato	cytosol	78.13	78.37
KRH29807	Soybean	cytosol	72.85	73.07
VIT_06s0004g04530.t01	Wine grape	cytosol	74.96	72.87
KRH24807	Soybean	cytosol	72.55	72.66
AT3G46510.1	Thale cress	cytosol	68.93	69.24
Bra033820.1-P	Field mustard	cytosol	68.48	69.0
Bra018212.1-P	Field mustard	cytosol	67.72	68.97
CDX68379	Canola	cytosol	68.33	68.84
CDX86080	Canola	cytosol	67.72	68.45
CDX99112	Canola	cytosol	67.42	68.24
CDX68380	Canola	cytosol	54.3	67.67
AT2G28830.1	Thale cress	endoplasmic reticulum	56.86	64.78
CDY31736	Canola	cytosol	61.39	63.4
Bra035665.1-P	Field mustard	cytosol	61.84	62.88
CDX77213	Canola	cytosol	60.94	62.83
Os12t0570000-01	Rice	cytosol	48.11	61.7
GSMUA_Achr10P...	Banana	cytosol	56.56	59.9
Zm00001d030732_P001	Maize	cytosol	57.92	57.74
TraesCS4A01G097700.1	Wheat	cytosol	61.84	57.34
GSMUA_Achr5P28670_001	Banana	cytosol	49.17	57.19
OQU79384	Sorghum	cytosol	57.32	57.06
Solyc11g008390.1.1	Tomato	cytosol	53.54	56.89
Zm00001d041548_P002	Maize	cytosol	57.47	56.7
GSMUA_Achr5P07140_001	Banana	cytosol	52.64	55.57
HORVU5Hr1G021270.1	Barley	cytosol	57.16	55.57
TraesCS5A01G078400.1	Wheat	cytosol	57.32	55.56
TraesCS5B01G087500.1	Wheat	cytosol	56.86	55.28
Zm00001d028623_P001	Maize	cytosol	60.48	55.23
HORVU5Hr1G021280.1	Barley	cytosol	57.16	55.09
TraesCS5D01G093700.1	Wheat	cytosol	56.71	54.97
GSMUA_Achr6P34170_001	Banana	cytosol	54.9	54.82
Os03t0275900-01	Rice	cytosol	59.43	54.27
OQU92820	Sorghum	cytosol	60.63	53.67
TraesCS4B01G206900.1	Wheat	plastid	61.24	53.0
HORVU4Hr1G059610.2	Barley	cytosol	61.54	52.85
TraesCS4D01G207700.2	Wheat	plastid	61.54	52.51
Solyc12g094610.1.1	Tomato	cytosol	36.35	44.88
GSMUA_Achr10P...	Banana	cytosol	58.22	44.68
Solyc04g007640.2.1	Tomato	cytosol	43.14	44.2
Solyc12g088360.1.1	Tomato	cytosol	18.1	43.64
Solyc05g008230.2.1	Tomato	cytosol	41.33	42.15
Solyc04g082440.2.1	Tomato	cytosol	40.87	41.76
Solyc09g056450.2.1	Tomato	cytosol	26.7	39.42
Solyc06g051090.1.1	Tomato	cytosol	31.52	37.19
Solyc04g077850.2.1	Tomato	cytosol	19.76	36.8
Solyc04g050780.1.1	Tomato	cytosol	21.27	32.71
Solyc04g050770.1.1	Tomato	cytosol	20.97	31.38
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	34.09	31.22
Solyc11g012440.1.1	Tomato	cytosol, plastid	21.12	30.5
Solyc04g014810.2.1	Tomato	plastid	20.51	30.16
Solyc09g025270.2.1	Tomato	cytosol	33.94	30.04
Solyc09g018230.1.1	Tomato	plastid	30.92	29.8
Solyc03g114160.1.1	Tomato	cytosol	29.26	28.45
Solyc01g014230.2.1	Tomato	cytosol	34.69	28.36
Solyc12g100000.1.1	Tomato	cytosol, plastid	34.99	28.33
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	28.96	28.03

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537	UniProt:K4D9L3	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF235	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g066040.1	EnsemblPlants:Solyc11g066040.1.1	UniParc:UPI0002769CA1
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4D9L3]

Coordinates

chr11:+:51713001..51720487

Molecular Weight (calculated)

72321.0 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.296

Length

663 amino acids

Sequence
(BLAST)

001: MGEEDKGEVA KKLIEIVNDI SSISDYRISV KKQFCNLARR LKLLTPMFEE IRDSKEKLPI ESMKSLISLK EALESAKELL KFGSEGSKIY LVLEMEHIMN
101: KFQELTSKLE QALNGIYYEK LEISDEVKEQ VALVLSQFRR AKGRVETPDA ELHEDLLSLY SRSNDAAVDH DVLRRLVDKL QLTELDDLKQ ESLALHEMVI
201: ATDGDPEERI EKMSMLLKKI KDFVQTENPN IDSYGRDKSS NISGQASADG SQKAPVIPDD FRCPISLELM TDPVIVSTGQ TYERSCIEKW LEAGHSTCPK
301: TQQALTSKSL TPNYVLRSLI AQWCEANGIE PPKRPGSAPP KKSASACTPA EHSMIENLLR KLKSGSPEEA RSAAGEIRLL AKRNTDNRVA IAEAGAIPLL
401: VHLLSTPDSR TQEHAVTALL NLSICENNKG HIVTSGAVPG IVHVLRKGSM EARENAAATL FSLSVIDENK VTIGSSGAIP PLVALLSEGT QRGKKDAATA
501: LFNLCIYQGN KGRAIRAGVV PTLMLLLTKP QGGMVDEALA ILAILSSHPE GKAAIGAADA VPVLVDVIAN GSPRNKENAA AVLVHLCSGD QHHLVEAQRL
601: GLIGPLMDLV QNGTERGRRK ATQLLERMNR LAEQTKQPQA QAESQTQNQV SRSPASSTNA IES

Best Arabidopsis Sequence Match ( AT3G46510.1 )
(BLAST)

001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT

Arabidopsis Description

PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.