Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033820.1-P | Field mustard | cytosol | 92.73 | 93.01 |
| CDX68379 | Canola | cytosol | 92.58 | 92.86 |
| CDX86080 | Canola | cytosol | 90.61 | 91.16 |
| CDX68380 | Canola | cytosol | 73.03 | 90.6 |
| Bra018212.1-P | Field mustard | cytosol | 88.79 | 90.02 |
| CDX99112 | Canola | cytosol | 89.09 | 89.77 |
| KRH29807 | Soybean | cytosol | 69.39 | 69.29 |
| Solyc11g066040.1.1 | Tomato | cytosol | 69.24 | 68.93 |
| VIT_06s0004g04530.t01 | Wine grape | cytosol | 70.91 | 68.62 |
| KRH24807 | Soybean | cytosol | 68.79 | 68.58 |
| PGSC0003DMT400001049 | Potato | cytosol | 68.48 | 68.07 |
| PGSC0003DMT400078166 | Potato | cytosol | 66.82 | 66.72 |
| Solyc06g076040.2.1 | Tomato | cytosol | 66.21 | 66.11 |
| AT2G28830.1 | Thale cress | endoplasmic reticulum | 55.91 | 63.4 |
| Os12t0570000-01 | Rice | cytosol | 46.06 | 58.8 |
| Zm00001d030732_P001 | Maize | cytosol | 55.0 | 54.59 |
| OQU79384 | Sorghum | cytosol | 55.0 | 54.5 |
| GSMUA_Achr10P... | Banana | cytosol | 51.52 | 54.31 |
| GSMUA_Achr5P28670_001 | Banana | cytosol | 46.82 | 54.21 |
| HORVU5Hr1G021270.1 | Barley | cytosol | 55.61 | 53.81 |
| Zm00001d041548_P002 | Maize | cytosol | 54.7 | 53.72 |
| TraesCS5B01G087500.1 | Wheat | cytosol | 55.3 | 53.52 |
| TraesCS5A01G078400.1 | Wheat | cytosol | 55.45 | 53.51 |
| TraesCS5D01G093700.1 | Wheat | cytosol | 55.3 | 53.36 |
| HORVU5Hr1G021280.1 | Barley | cytosol | 55.61 | 53.34 |
| GSMUA_Achr5P07140_001 | Banana | cytosol | 50.0 | 52.55 |
| AT3G54850.1 | Thale cress | cytosol | 50.15 | 52.37 |
| TraesCS4A01G097700.1 | Wheat | cytosol | 56.21 | 51.89 |
| Zm00001d028623_P001 | Maize | cytosol | 56.82 | 51.65 |
| GSMUA_Achr6P34170_001 | Banana | cytosol | 51.52 | 51.2 |
| Os03t0275900-01 | Rice | cytosol | 54.55 | 49.59 |
| OQU92820 | Sorghum | cytosol | 55.45 | 48.87 |
| TraesCS4B01G206900.1 | Wheat | plastid | 56.06 | 48.3 |
| HORVU4Hr1G059610.2 | Barley | cytosol | 56.21 | 48.06 |
| TraesCS4D01G207700.2 | Wheat | plastid | 55.76 | 47.36 |
| AT1G23030.1 | Thale cress | cytosol | 40.3 | 43.46 |
| AT1G71020.1 | Thale cress | cytosol | 40.3 | 42.36 |
| GSMUA_Achr10P... | Banana | cytosol | 55.15 | 42.13 |
| AT5G42340.1 | Thale cress | cytosol | 39.09 | 39.09 |
| AT3G01400.1 | Thale cress | cytosol | 19.24 | 35.77 |
| AT5G18320.1 | Thale cress | cytosol | 23.33 | 33.62 |
| AT3G07360.1 | Thale cress | cytosol | 23.33 | 33.48 |
| AT5G58680.1 | Thale cress | cytosol | 17.88 | 33.05 |
| AT5G67340.1 | Thale cress | cytosol | 32.58 | 30.41 |
| AT5G18340.1 | Thale cress | nucleus | 20.45 | 29.61 |
| AT1G29340.1 | Thale cress | plastid | 32.58 | 29.49 |
| AT2G23140.1 | Thale cress | cytosol | 34.85 | 27.74 |
| AT5G18330.1 | Thale cress | cytosol | 18.64 | 27.64 |
| AT3G54790.1 | Thale cress | cytosol | 31.82 | 27.63 |
| AT4G16490.1 | Thale cress | plastid | 19.55 | 27.33 |
| AT5G01830.1 | Thale cress | plastid | 27.27 | 26.71 |
| AT1G60190.1 | Thale cress | cytosol, plastid | 25.15 | 24.2 |
| AT1G10560.1 | Thale cress | cytosol | 24.55 | 23.24 |
Protein Annotations
| Gene3D:1.20.930.20 | Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | EntrezGene:823804 | ProteinID:AEE78167.1 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT3G46510 | EnsemblPlantsGene:AT3G46510 | RefSeq:AT3G46510 | TAIR:AT3G46510 |
| RefSeq:AT3G46510-TAIR-G | EnsemblPlants:AT3G46510.1 | TAIR:AT3G46510.1 | EMBL:AY042791 | EMBL:AY128813 | InterPro:Adaptor_Cbl_N_dom_sf |
| InterPro:Armadillo | Unigene:At.23070 | ProteinID:CAB62321.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0004871 | GO:GO:0005102 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007166 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042742 | GO:GO:0043066 |
| GO:GO:0050777 | GO:GO:0070696 | GO:GO:2000028 | InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | InterPro:IPR036537 | RefSeq:NP_190235.1 | PFAM:PF00514 | PFAM:PF04564 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000056 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50176 | PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF235 | Symbol:PUB13 | UniProt:Q9SNC6 |
| SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00000AA000 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
PUB13U-box domain-containing protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNC6]
Coordinates
chr3:-:17123731..17126897
Molecular Weight (calculated)
71970.1 Da
IEP (calculated)
4.735
GRAVY (calculated)
-0.249
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKASAAQ SLIDVVNEIA AISDYRITVK KLCYNLARRL KLLVPMFEEI RESNEPISED TLKTLMNLKE AMCSAKDYLK FCSQGSKIYL VMEREQVTSK
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
101: LMEVSVKLEQ SLSQIPYEEL DISDEVREQV ELVLSQFRRA KGRVDVSDDE LYEDLQSLCN KSSDVDAYQP VLERVAKKLH LMEIPDLAQE SVALHEMVAS
201: SGGDVGENIE EMAMVLKMIK DFVQTEDDNG EEQKVGVNSR SNGQTSTAAS QKIPVIPDDF RCPISLEMMR DPVIVSSGQT YERTCIEKWI EGGHSTCPKT
301: QQALTSTTLT PNYVLRSLIA QWCEANDIEP PKPPSSLRPR KVSSFSSPAE ANKIEDLMWR LAYGNPEDQR SAAGEIRLLA KRNADNRVAI AEAGAIPLLV
401: GLLSTPDSRI QEHSVTALLN LSICENNKGA IVSAGAIPGI VQVLKKGSME ARENAAATLF SLSVIDENKV TIGALGAIPP LVVLLNEGTQ RGKKDAATAL
501: FNLCIYQGNK GKAIRAGVIP TLTRLLTEPG SGMVDEALAI LAILSSHPEG KAIIGSSDAV PSLVEFIRTG SPRNRENAAA VLVHLCSGDP QHLVEAQKLG
601: LMGPLIDLAG NGTDRGKRKA AQLLERISRL AEQQKETAVS QPEEEAEPTH PESTTEAADT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.