Factsheet for AT5G42340.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95193	Canola	cytosol	85.76	86.41
Bra027977.1-P	Field mustard	cytosol	85.3	86.35
CDY68037	Canola	cytosol	85.3	85.95
KRH00831	Soybean	cytosol	59.55	61.89
KRH40395	Soybean	cytosol	59.24	61.57
VIT_18s0001g14180.t01	Wine grape	cytosol	59.7	57.6
KRH33490	Soybean	cytosol	45.15	56.76
PGSC0003DMT400025648	Potato	cytosol	55.76	56.7
Solyc04g082440.2.1	Tomato	cytosol	55.45	56.39
GSMUA_Achr4P04900_001	Banana	cytosol	44.55	55.68
Solyc12g094610.1.1	Tomato	cytosol	45.15	55.49
GSMUA_Achr4P05030_001	Banana	cytosol	43.79	55.15
PGSC0003DMT400075612	Potato	cytosol	53.18	54.42
Os08t0481200-01	Rice	cytosol	50.15	51.56
KXG20946	Sorghum	cytosol	50.15	51.48
Zm00001d014845_P001	Maize	cytosol	49.85	51.33
TraesCS7D01G536300.1	Wheat	cytosol	49.85	51.01
TraesCS7A01G549700.1	Wheat	cytosol	49.7	50.77
HORVU7Hr1G121810.1	Barley	cytosol	48.64	50.08
TraesCS7B01G186600.1	Wheat	cytosol	48.79	50.0
TraesCS7A01G293900.1	Wheat	cytosol	48.64	49.84
TraesCS7D01G289800.1	Wheat	cytosol	48.64	49.84
HORVU7Hr1G061800.2	Barley	cytosol	48.33	49.53
EES15482	Sorghum	cytosol	48.18	49.46
Zm00001d031263_P001	Maize	cytosol	47.73	48.84
TraesCS7B01G473200.1	Wheat	cytosol	49.7	48.66
Os06t0726900-00	Rice	cytosol	26.82	46.58
AT3G46510.1	Thale cress	cytosol	39.09	39.09
AT3G54850.1	Thale cress	cytosol	37.12	38.77
AT2G28830.1	Thale cress	endoplasmic reticulum	33.79	38.32
AT3G07360.1	Thale cress	cytosol	23.94	34.35
AT1G23030.1	Thale cress	cytosol	31.67	34.15
AT1G71020.1	Thale cress	cytosol	32.42	34.08
AT3G01400.1	Thale cress	cytosol	17.88	33.24
AT5G58680.1	Thale cress	cytosol	17.27	31.93
AT5G18320.1	Thale cress	cytosol	21.21	30.57
AT1G29340.1	Thale cress	plastid	30.0	27.16
AT5G67340.1	Thale cress	cytosol	29.09	27.16
AT5G18340.1	Thale cress	nucleus	18.64	26.97
AT3G54790.1	Thale cress	cytosol	30.76	26.71
AT5G01830.1	Thale cress	plastid	27.12	26.56
AT2G23140.1	Thale cress	cytosol	33.03	26.3
AT5G18330.1	Thale cress	cytosol	17.27	25.62
AT4G16490.1	Thale cress	plastid	18.03	25.21
AT1G60190.1	Thale cress	cytosol, plastid	22.42	21.57
AT1G10560.1	Thale cress	cytosol	21.82	20.66

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:834240	ProteinID:AED94798.1	EMBL:AK175585
InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT5G42340	EnsemblPlantsGene:AT5G42340	RefSeq:AT5G42340	TAIR:AT5G42340
RefSeq:AT5G42340-TAIR-G	EnsemblPlants:AT5G42340.1	TAIR:AT5G42340.1	InterPro:Armadillo	Unigene:At.51075	ProteinID:BAB10475.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	RefSeq:NP_199049.2	PFAM:PF00514
PFAM:PF04564	PO:PO:0001016	PO:PO:0001017	PO:PO:0007611	PO:PO:0007616	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	Symbol:PUB15	UniProt:Q681N2	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00005DC292	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]

Coordinates

chr5:-:16927893..16930532

Molecular Weight (calculated)

73900.1 Da

IEP (calculated)

4.729

GRAVY (calculated)

-0.231

Length

660 amino acids

Sequence
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.