Factsheet for AT2G23140.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76873	Canola	cytosol, plastid	80.94	89.83
KRH17146	Soybean	cytosol	22.2	77.31
Bra032180.1-P	Field mustard	cytosol	52.23	74.14
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	22.44	73.23
CDY38931	Canola	cytosol	52.71	71.06
GSMUA_Achr9P12570_001	Banana	cytosol	25.57	70.67
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	81.42	65.34
GSMUA_Achr4P01530_001	Banana	plasma membrane	45.11	61.21
KRG98177	Soybean	cytosol	59.47	58.62
KRH30135	Soybean	cytosol	59.23	58.59
Solyc01g014230.2.1	Tomato	cytosol	57.18	58.45
TraesCS3B01G422200.1	Wheat	cytosol	31.0	58.14
TraesCS3A01G390200.1	Wheat	cytosol	30.64	57.86
Solyc12g100000.1.1	Tomato	cytosol, plastid	56.94	57.63
TraesCS3D01G382500.1	Wheat	cytosol	30.64	57.47
PGSC0003DMT400046295	Potato	cytosol	56.69	57.25
HORVU3Hr1G081380.1	Barley	cytosol	30.28	56.79
VIT_07s0129g00590.t01	Wine grape	cytosol	57.9	56.6
KRH72794	Soybean	plasma membrane	55.37	56.46
AT5G67340.1	Thale cress	cytosol	46.68	54.74
Os08t0110500-01	Rice	plasma membrane	49.7	50.0
TraesCS3D01G527900.1	Wheat	cytosol	49.94	49.82
TraesCS3A01G521300.1	Wheat	cytosol	49.82	49.7
TraesCS3B01G591000.1	Wheat	cytosol	49.58	49.46
HORVU3Hr1G113910.3	Barley	cytosol	49.82	49.28
PGSC0003DMT400027406	Potato	cytosol	15.56	48.31
Zm00001d035040_P007	Maize	mitochondrion	48.85	46.45
AT3G01400.1	Thale cress	cytosol	19.18	44.79
Os01t0884400-01	Rice	plasma membrane	44.63	44.15
EES01872	Sorghum	cytosol	42.7	43.98
Zm00001d049708_P007	Maize	cytosol	46.08	43.31
TraesCS3B01G443500.1	Wheat	cytosol	27.14	42.53
TraesCS3A01G410100.1	Wheat	cytosol	26.78	41.97
AT5G58680.1	Thale cress	cytosol	17.85	41.46
AT3G54790.1	Thale cress	cytosol	38.0	41.45
EES14396	Sorghum	cytosol	49.34	40.62
TraesCS3A01G410000.1	Wheat	cytosol	30.16	39.43
Zm00001d042608_P002	Maize	cytosol	43.06	38.59
AT3G54850.1	Thale cress	cytosol	27.99	36.71
AT3G46510.1	Thale cress	cytosol	27.74	34.85
AT4G16490.1	Thale cress	plastid	19.78	34.75
AT2G28830.1	Thale cress	endoplasmic reticulum	23.52	33.51
AT5G42340.1	Thale cress	cytosol	26.3	33.03
AT3G07360.1	Thale cress	cytosol	18.21	32.83
AT1G23030.1	Thale cress	cytosol	23.52	31.86
AT1G71020.1	Thale cress	cytosol	23.52	31.05
AT5G18320.1	Thale cress	cytosol	17.13	31.0
AT1G29340.1	Thale cress	plastid	24.0	27.3
AT5G18330.1	Thale cress	cytosol	14.35	26.74
AT5G18340.1	Thale cress	nucleus	14.48	26.32
AT5G01830.1	Thale cress	plastid	20.39	25.07
AT1G10560.1	Thale cress	cytosol	17.25	20.52
AT1G60190.1	Thale cress	cytosol, plastid	16.89	20.41

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:816846	ProteinID:AAB87116.1	ProteinID:AAM14930.1
ProteinID:AEC07417.1	ProteinID:AEC07418.1	ProteinID:ANM61792.1	InterPro:ARM-like	InterPro:ARM-type_fold	ArrayExpress:AT2G23140
EnsemblPlantsGene:AT2G23140	RefSeq:AT2G23140	TAIR:AT2G23140	RefSeq:AT2G23140-TAIR-G	EnsemblPlants:AT2G23140.1	TAIR:AT2G23140.1
InterPro:Armadillo	Unigene:At.39339	ncoils:Coil	UniProt:F4ILG6	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0016043
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0034614	GO:GO:0048658	GO:GO:0061630
GO:GO:1904821	GO:GO:1904822	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
RefSeq:NP_001189583.1	RefSeq:NP_001323989.1	RefSeq:NP_179895.6	PFAM:PF00514	PFAM:PF04564	PO:PO:0000005
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0025195	PO:PO:0025281	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0001A7B018	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]

Coordinates

chr2:-:9845410..9849379

Molecular Weight (calculated)

90350.6 Da

IEP (calculated)

5.283

GRAVY (calculated)

-0.345

Length

829 amino acids

Sequence
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.