CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035040_P007	Maize	mitochondrion	79.05	91.28
Os08t0110500-01	Rice	plasma membrane	69.81	85.32
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	21.15	83.86
TraesCS3D01G527900.1	Wheat	cytosol	68.12	82.55
TraesCS3A01G521300.1	Wheat	cytosol	67.92	82.31
TraesCS3B01G591000.1	Wheat	cytosol	67.63	81.95
HORVU3Hr1G113910.3	Barley	cytosol	67.83	81.5
TraesCS3D01G382500.1	Wheat	cytosol	35.05	79.86
TraesCS3A01G390200.1	Wheat	cytosol	34.66	79.5
TraesCS3B01G422200.1	Wheat	cytosol	34.66	78.96
HORVU3Hr1G081380.1	Barley	cytosol	34.36	78.28
KRH17146	Soybean	cytosol	18.07	76.47
GSMUA_Achr9P12570_001	Banana	cytosol	22.14	74.33
GSMUA_Achr4P01530_001	Banana	plasma membrane	39.82	65.63
Solyc01g014230.2.1	Tomato	cytosol	43.2	53.64
PGSC0003DMT400046295	Potato	cytosol	43.3	53.11
CDX76873	Canola	cytosol, plastid	39.03	52.61
VIT_07s0129g00590.t01	Wine grape	cytosol	44.09	52.36
Solyc12g100000.1.1	Tomato	cytosol, plastid	41.91	51.53
KRG98177	Soybean	cytosol	42.7	51.13
KRH30135	Soybean	cytosol	42.3	50.84
TraesCS3A01G410000.1	Wheat	cytosol	31.78	50.47
KRH72794	Soybean	plasma membrane	40.12	49.69
TraesCS3A01G410100.1	Wheat	cytosol	26.02	49.53
TraesCS3B01G443500.1	Wheat	cytosol	25.92	49.34
AT2G23140.1	Thale cress	cytosol	40.62	49.34
PGSC0003DMT400027406	Potato	cytosol	12.81	48.31
EES01872	Sorghum	cytosol	38.23	47.83
CDY18649	Canola	cytosol, plastid	33.07	46.77
CDX81323	Canola	cytosol, plastid	33.56	46.75
Bra037117.1-P	Field mustard	cytosol, plastid	33.37	45.78
AT5G67340.1	Thale cress	cytosol	32.08	45.69
Bra032180.1-P	Field mustard	cytosol	25.12	43.32
CDY38931	Canola	cytosol	26.12	42.76
CDY57440	Canola	cytosol	27.01	41.27
Bra012155.1-P	Field mustard	cytosol	27.01	41.27
EER97464	Sorghum	cytosol	14.8	41.16
CDY12838	Canola	cytosol	28.1	40.49
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	40.81	39.79
EER87680	Sorghum	cytosol	22.84	38.27
EER97453	Sorghum	plastid	16.58	35.68
OQU79384	Sorghum	cytosol	21.45	32.43
EES15482	Sorghum	cytosol	20.36	31.88
EES06804	Sorghum	cytosol	14.5	31.47
KXG20946	Sorghum	cytosol	19.56	30.64
EES07310	Sorghum	cytosol	19.36	30.56
OQU92820	Sorghum	cytosol	21.75	29.24
OQU78182	Sorghum	plastid	17.28	25.63
KXG33626	Sorghum	plastid	16.48	23.65
EES04812	Sorghum	plastid	16.78	23.18
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	15.29	21.57
KXG35540	Sorghum	plasma membrane	14.3	20.11

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8064368	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5YLX0	ncoils:Coil	EnsemblPlants:EES14396	ProteinID:EES14396	ProteinID:EES14396.2
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3007G011400
SUPFAM:SSF48371	SUPFAM:SSF57850	unigene:Sbi.13722	UniParc:UPI000B8B9955	InterPro:Ubox_domain	RefSeq:XP_002444901.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:1025117..1032828

Molecular Weight (calculated)

108227.0 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.314

Length

1007 amino acids

Sequence
(BLAST)

0001: MRERGKHERN VDGASEEPSG LGVAATCLKG AGRQPRQKGA GAVINALRGV VSYGGSRISV AGRKVPSVPR IAAAMCTEAG PARLAPDLLA AAAHQTRREE
0101: NGRAQPLHHH HLYLGDESSD LPFLFSSRLV VSFSASASDT RREERGREGE GSLQPDPPPP SPPPPGSPPT PPPSPTRLQV RSGLMDNLSP STLLNSISCL
0201: GALTSDVSTV RPKPIQKYCK NVYDVSSIVN PLVEDLCKSP EEQLNEVLKD LDTAVNEASG LIGNWHQTTS KIYFGWQIES VISDIQGCSL QLCQLVNSLL
0301: PSLTGRACTC IEKLQDINYE RMFDLIKEVA VELAETNAVG SENLLKLSSL LSLSTNMELY MESVSLENLR TRALRSENRE ELELAEQMIP LVNYMHDHLL
0401: REKQQLSING VPIPADFCCP LSLELMSDPV IVASGQTYER VYIKLWLDEG FTICPKTRQR LGHSNLIPNY TVKALIANWC ESHDIRLPDP MKSLKLNFPS
0501: AASSLQDSSA AGGSPLHPSV VSRANIPGSP EADVYLRNLN GASPPHSLAN QNSHVHEVST SQTSENANGS APDVSRLSLA SSEARESSLE GRRGGLIGQM
0601: SEHSTEEAFQ SSNLDRDLQD NLASSSLNGS LPNSGQLDGE CDNGVTRVPS DRTNYSSDAS GEVTDGGGAP VASSVPQREH LIPPRLGPRG QFIRRQPSDR
0701: GFPRIISSST MDARSDLSAI ENQVRKLIDD LRSDSIDVQR SAASDLRSLA KHNMENRIVI ANCGAVNLLV SLLHSPDAKT QEHAVTALLN LSINDNNKIA
0801: IANADAVDPL IHVLETGNPE AKENSAATLF SLSVIEENKV RIGRSGAIKP LVDLLGNGTP RGKKDAATAL FNLSILHENK ARIVQADAVR HLVELMDPAA
0901: GMVDKAVAVL ANLATIPEGR NAIGQARGIP ALVEVVELGS ARGKENAAAA LLQLCTNSNR FCSIVLQEGA VPPLVALSQS GTPRAREKAQ ALLSYFRSQR
1001: HGNSARR

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.