Factsheet for TraesCS3B01G422200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G390200.1	Wheat	cytosol	93.44	94.08
TraesCS3D01G382500.1	Wheat	cytosol	93.67	93.67
HORVU3Hr1G081380.1	Barley	cytosol	90.95	90.95
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	47.06	81.89
GSMUA_Achr9P12570_001	Banana	cytosol	49.09	72.33
KRH17146	Soybean	cytosol	38.91	72.27
PGSC0003DMT400027406	Potato	cytosol	27.15	44.94
TraesCS3B01G591000.1	Wheat	cytosol	83.26	44.28
TraesCS3B01G443500.1	Wheat	cytosol	51.36	42.91
Os08t0110500-01	Rice	plasma membrane	79.41	42.6
TraesCS2B01G213900.1	Wheat	cytosol	32.35	39.61
GSMUA_Achr4P01530_001	Banana	plasma membrane	54.75	39.61
Zm00001d035040_P007	Maize	mitochondrion	76.92	38.99
Zm00001d049708_P007	Maize	cytosol	73.98	37.07
EES14396	Sorghum	cytosol	78.96	34.66
TraesCS2B01G216300.1	Wheat	plastid	35.07	33.84
CDX76873	Canola	cytosol, plastid	56.56	33.47
Solyc01g014230.2.1	Tomato	cytosol	59.28	32.31
PGSC0003DMT400046295	Potato	cytosol	59.28	31.91
Solyc12g100000.1.1	Tomato	cytosol, plastid	57.69	31.14
AT2G23140.1	Thale cress	cytosol	58.14	31.0
KRG98177	Soybean	cytosol	58.82	30.92
VIT_07s0129g00590.t01	Wine grape	cytosol	59.05	30.78
KRH30135	Soybean	cytosol	57.47	30.31
KRH72794	Soybean	plasma membrane	55.43	30.14
CDY18649	Canola	cytosol, plastid	45.48	28.23
CDX81323	Canola	cytosol, plastid	45.93	28.08
AT5G67340.1	Thale cress	cytosol	44.57	27.86
Bra037117.1-P	Field mustard	cytosol, plastid	45.93	27.66
TraesCS6B01G222200.1	Wheat	cytosol	25.34	26.73
CDY57440	Canola	cytosol	38.69	25.95
Bra012155.1-P	Field mustard	cytosol	38.69	25.95
CDY12838	Canola	cytosol	39.14	24.75
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	56.33	24.1
CDY38931	Canola	cytosol	29.86	21.46
Bra032180.1-P	Field mustard	cytosol	28.28	21.4
TraesCS6B01G324000.1	Wheat	cytosol	28.73	19.75
TraesCS2B01G294100.1	Wheat	nucleus	20.14	19.35
TraesCS5B01G087500.1	Wheat	cytosol	29.41	19.06
TraesCS7B01G186600.1	Wheat	cytosol	25.11	17.24
TraesCS4B01G206900.1	Wheat	plastid	29.86	17.23
TraesCS7B01G473200.1	Wheat	cytosol	26.02	17.06
TraesCS1B01G310100.1	Wheat	plastid	23.53	15.43
TraesCS3B01G377600.1	Wheat	plastid	22.62	14.56
TraesCS2B01G499300.1	Wheat	plasma membrane	21.04	13.5
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	19.91	12.55

Protein Annotations

EnsemblPlants:TraesCS3B01G422200.1	EnsemblPlantsGene:TraesCS3B01G422200	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR23315
PANTHER:PTHR23315:SF220	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185	SUPFAM:SSF48371
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:659079750..659081162

Molecular Weight (calculated)

47202.9 Da

IEP (calculated)

5.335

GRAVY (calculated)

-0.199

Length

442 amino acids

Sequence
(BLAST)

001: MQMALLARLS LASSEARESS LEERHAGSDE QTSEQSMEEA SQASHFDSDS QVLLVSSSVN DSLPNTGQID REVDIDNGMI RVPSDRTNYS GDASGEVADR
101: GLSVSSAPQR ENVILPRLGD VCLEGPFVRR QTSDRGFPRI ISSTSIDARG DFSAIENQVR GLINDLGSDS IEGQRSATSE IRLLAKHNME NRIVIANCGA
201: INLLVGLLHS PDAKIQENAV TALLNLSLSD INKIAIVNAD AIDPLVHVLE TGNPEAKENS AATLFSLSFI EDNRARIGRS GAVKPLVDLL GNGNPRGKKD
301: AVTALFNLSI LHENKGRIVQ ADALRHLVDL MDPAAGMVDK AVAVLANLAT IPEGRTAIGQ ARGIPALVEV VELGSAKAKE NAAAALLQLC TNSNRFCSMV
401: LQESAVPPLV ALSQSGTPRA REKAQALLSY FRNQRHGNSG RR

Best Arabidopsis Sequence Match ( AT2G23140.5 )
(BLAST)

001: MAEQSENNAE VEFLDQLIVI VNRMHERLLL IKQTQTSSVA ILADFFCPLS LEVMTDPVIV SSGQTYEKAF IKRWIDLGLK VCPKTRQTLT HTTLIPNYTV
101: KALIANWCET NDVKLPDPNK STSLNELSPL LSCTDSIPST GADVSARKVS NKSHDWDASS SETGKPSFSS RATEREGASP SRPASALGAS SPGISGNGYG
201: LDARRGSLND FEDRSNDSRE LRTDAPGRSS VSSTTRGSVE NGQTSENHHH RSPSATSTVS NEEFPRADAN ENSEESAHAT PYSSDASGEI RSGPLAATTS
301: AATRRDLSDF SPKFMDRRTR GQFWRRPSER LGSRIVSAPS NETRRDLSEV ETQVKKLVEE LKSSSLDTQR QATAELRLLA KHNMDNRIVI GNSGAIVLLV
401: ELLYSTDSAT QENAVTALLN LSINDNNKKA IADAGAIEPL IHVLENGSSE AKENSAATLF SLSVIEENKI KIGQSGAIGP LVDLLGNGTP RGKKDAATAL
501: FNLSIHQENK AMIVQSGAVR YLIDLMDPAA GMVDKAVAVL ANLATIPEGR NAIGQEGGIP LLVEVVELGS ARGKENAAAA LLQLSTNSGR FCNMVLQEGA
601: VPPLVALSQS GTPRAREKAQ ALLSYFRNQR HGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.