Factsheet for TraesCS3B01G377600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G339600.1	Wheat	plastid	99.42	99.13
TraesCS3A01G345800.1	Wheat	plastid	97.96	98.54
HORVU3Hr1G081300.1	Barley	plastid	97.67	97.53
Os01t0823900-01	Rice	plastid	87.34	88.24
Zm00001d043043_P001	Maize	cytosol	82.1	85.07
Zm00001d012494_P001	Maize	cytosol	81.95	84.92
KXG33626	Sorghum	plastid	84.42	82.62
TraesCS1B01G310100.1	Wheat	plastid	75.25	76.71
GSMUA_Achr8P25140_001	Banana	plastid	36.39	59.52
GSMUA_Achr7P22130_001	Banana	cytosol	49.2	53.4
GSMUA_Achr4P00200_001	Banana	plastid	53.86	52.56
Bra001998.1-P	Field mustard	cytosol	38.28	44.05
Solyc09g018230.1.1	Tomato	plastid	43.67	43.6
PGSC0003DMT400071349	Potato	plastid	43.81	43.5
AT5G01830.1	Thale cress	plastid	42.5	43.32
VIT_08s0058g01100.t01	Wine grape	plastid	42.65	43.28
CDX71307	Canola	cytosol	42.07	42.94
Bra019022.1-P	Field mustard	cytosol	42.07	42.88
CDY31406	Canola	cytosol	41.92	42.73
KRH76105	Soybean	cytosol, plastid	41.63	40.74
KRH65448	Soybean	plastid	27.95	39.34
TraesCS6B01G222200.1	Wheat	cytosol	22.27	36.52
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	12.23	33.07
TraesCS2B01G213900.1	Wheat	cytosol	14.7	27.98
TraesCS2B01G294100.1	Wheat	nucleus	18.49	27.61
TraesCS5B01G087500.1	Wheat	cytosol	26.78	26.98
TraesCS6B01G324000.1	Wheat	cytosol	24.75	26.44
TraesCS2B01G499300.1	Wheat	plasma membrane	26.35	26.27
TraesCS7B01G186600.1	Wheat	cytosol	24.45	26.09
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	26.35	25.82
TraesCS4B01G206900.1	Wheat	plastid	28.24	25.33
TraesCS2B01G216300.1	Wheat	plastid	16.45	24.67
TraesCS7B01G473200.1	Wheat	cytosol	24.16	24.63
TraesCS3B01G422200.1	Wheat	cytosol	14.56	22.62
TraesCS3B01G443500.1	Wheat	cytosol	16.3	21.17
TraesCS3B01G591000.1	Wheat	cytosol	23.73	19.61

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF147	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS3B01G377600	EnsemblPlants:TraesCS3B01G377600.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:594743353..594745416

Molecular Weight (calculated)

73139.9 Da

IEP (calculated)

5.663

GRAVY (calculated)

0.034

Length

687 amino acids

Sequence
(BLAST)

001: MAKPRAVVTT ACASAAPSTS YASAFLPPPP SPSDGDLLRS LHRLARDLSA ADAPAPFLRA AFASVSRRAR LLAAAFDDLL LCAAGEGDLP RSASLCLREV
101: LLVLQRFKAV VADCATRSRT LLLLQSDEMD AELRDLHHDL ATLLDLLPVV ELGLADDVMD LLALASRQCR RCASAAEPEP ALKTTVLSLI EEIEREIVPE
201: RERLEEILEE VGINDPASCS DEIESLEREI GDRASERWTA AMIALVGLLR YAKCVLFSAT PRPSDSKADV DVEDDGESPA PPPDLRCPIS LDLMRDPVVA
301: ASGQTYDRES IDRWFSSGKS TCPKTGQVLA NLELVPNKSL KNLISKWCRE NGVAMEVCEA SKSEQAQAVA ANKAALEVAR MTASYLVKKL SVSFSPDAAN
401: RVVHEIRLLS KSGSDNRAFV GEAGAVPMLV PLLYSEDAGL QLNAVTALLN LSILEANKKR IMHADGAVEA VTHIMSSGTT WRAKENAAAA VLSLASVHTY
501: RRRLGRNSSV VEKLVHLVRT GPTSTKKDAL AALLSLAGER ENVGKLVEAG VAEAALSAIS DEETAAAVLA ALAKRGGAEA IVNIDGAVAR LVAEMRRGTE
601: WARESATAAL VLLCRRLGAR AVTQVMGVAG VEWAIWELMG TGTDRARRKA ASLGRICRRW AAASAADGER GAECPASSVV PPAMMAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.