Factsheet for AT5G01830.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001998.1-P	Field mustard	cytosol	74.63	84.25
CDY31406	Canola	cytosol	83.53	83.53
CDX71307	Canola	cytosol	83.38	83.51
Bra019022.1-P	Field mustard	cytosol	83.23	83.23
VIT_08s0058g01100.t01	Wine grape	plastid	58.75	58.49
Solyc09g018230.1.1	Tomato	plastid	56.82	55.67
PGSC0003DMT400071349	Potato	plastid	56.97	55.49
KRH76105	Soybean	cytosol, plastid	55.79	53.56
KRH65448	Soybean	plastid	37.54	51.84
GSMUA_Achr8P25140_001	Banana	plastid	31.6	50.71
Zm00001d012494_P001	Maize	cytosol	43.18	43.89
TraesCS1A01G300000.1	Wheat	cytosol	43.47	43.86
GSMUA_Achr7P22130_001	Banana	cytosol	41.1	43.76
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	43.47	43.73
GSMUA_Achr4P00200_001	Banana	plastid	45.55	43.61
OQU78182	Sorghum	plastid	43.92	43.59
Zm00001d043043_P001	Maize	cytosol	42.58	43.29
TraesCS1D01G299400.1	Wheat	cytosol, plastid	42.73	43.18
TraesCS1B01G310100.1	Wheat	plastid	43.18	43.18
HORVU1Hr1G069990.1	Barley	plastid	43.47	42.96
Os01t0823900-01	Rice	plastid	43.18	42.79
TraesCS3A01G345800.1	Wheat	plastid	43.32	42.75
Os05t0476700-01	Rice	plastid	42.88	42.69
HORVU3Hr1G081300.1	Barley	plastid	43.47	42.59
TraesCS3B01G377600.1	Wheat	plastid	43.32	42.5
TraesCS3D01G339600.1	Wheat	plastid	43.32	42.38
KXG33626	Sorghum	plastid	42.88	41.17
AT1G29340.1	Thale cress	plastid	36.94	34.16
AT3G54850.1	Thale cress	cytosol	27.15	28.96
AT2G28830.1	Thale cress	endoplasmic reticulum	24.18	28.01
AT1G23030.1	Thale cress	cytosol	25.37	27.94
AT1G71020.1	Thale cress	cytosol	25.82	27.71
AT3G46510.1	Thale cress	cytosol	26.71	27.27
AT3G07360.1	Thale cress	cytosol	18.55	27.17
AT5G42340.1	Thale cress	cytosol	26.56	27.12
AT5G18320.1	Thale cress	cytosol	17.8	26.2
AT1G60190.1	Thale cress	cytosol, plastid	26.11	25.66
AT5G67340.1	Thale cress	cytosol	25.37	24.19
AT5G18340.1	Thale cress	nucleus	15.88	23.46
AT1G10560.1	Thale cress	cytosol	23.44	22.67
AT3G01400.1	Thale cress	cytosol	11.42	21.69
AT5G58680.1	Thale cress	cytosol	11.13	21.01
AT3G54790.1	Thale cress	cytosol	23.59	20.92
AT2G23140.1	Thale cress	cytosol	25.07	20.39
AT5G18330.1	Thale cress	cytosol	13.35	20.22
AT4G16490.1	Thale cress	plastid	13.95	19.92

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:831850	UniProt:A0A178UNI7	ProteinID:AED90398.1	EMBL:AK229397
InterPro:ARM-type_fold	ArrayExpress:AT5G01830	EnsemblPlantsGene:AT5G01830	RefSeq:AT5G01830	TAIR:AT5G01830	RefSeq:AT5G01830-TAIR-G
EnsemblPlants:AT5G01830.1	TAIR:AT5G01830.1	InterPro:Armadillo	EMBL:BT015367	EMBL:BT015725	ProteinID:CAB82753.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR013083	RefSeq:NP_195803.1
ProteinID:OAO94957.1	PFAM:PF00514	PFAM:PF04564	PO:PO:0000293	PO:PO:0009005	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	UniProt:Q9LZW3	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00000AB1F2	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]

Coordinates

chr5:+:320349..323213

Molecular Weight (calculated)

73604.2 Da

IEP (calculated)

7.229

GRAVY (calculated)

0.058

Length

674 amino acids

Sequence
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.