Factsheet for Zm00001d038471_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78182	Sorghum	plastid	94.18	92.93
Os05t0476700-01	Rice	plastid	80.9	80.06
TraesCS1A01G300000.1	Wheat	cytosol	79.7	79.94
TraesCS1D01G299400.1	Wheat	cytosol, plastid	79.25	79.61
TraesCS1B01G310100.1	Wheat	plastid	79.25	78.78
HORVU1Hr1G069990.1	Barley	plastid	80.15	78.74
Zm00001d012494_P001	Maize	cytosol	72.09	72.85
Zm00001d043043_P001	Maize	cytosol	71.64	72.4
GSMUA_Achr8P25140_001	Banana	plastid	36.57	58.33
GSMUA_Achr7P22130_001	Banana	cytosol	49.4	52.29
GSMUA_Achr4P00200_001	Banana	plastid	53.88	51.28
Bra001998.1-P	Field mustard	cytosol	39.55	44.39
AT5G01830.1	Thale cress	plastid	43.73	43.47
Solyc09g018230.1.1	Tomato	plastid	43.73	42.59
PGSC0003DMT400071349	Potato	plastid	43.88	42.49
CDX71307	Canola	cytosol	42.54	42.35
Bra019022.1-P	Field mustard	cytosol	42.54	42.28
VIT_08s0058g01100.t01	Wine grape	plastid	42.69	42.25
CDY31406	Canola	cytosol	42.39	42.14
KRH76105	Soybean	cytosol, plastid	42.69	40.74
KRH65448	Soybean	plastid	29.1	39.96
Zm00001d053544_P001	Maize	mitochondrion, plastid	35.97	34.18
Zm00001d016225_P001	Maize	plastid	37.01	34.02
Zm00001d016501_P001	Maize	cytosol	21.49	30.97
Zm00001d045632_P004	Maize	cytosol, mitochondrion	27.31	29.05
Zm00001d000381_P001	Maize	cytosol	26.72	28.06
Zm00001d021978_P001	Maize	cytosol	15.07	27.9
Zm00001d030732_P001	Maize	cytosol	27.61	27.82
Zm00001d006726_P001	Maize	cytosol	14.93	27.78
Zm00001d041548_P002	Maize	cytosol	27.61	27.53
Zm00001d031263_P001	Maize	cytosol	25.97	26.98
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	27.76	26.8
Zm00001d028623_P001	Maize	cytosol	28.96	26.72
Zm00001d014845_P001	Maize	cytosol	25.37	26.52
Zm00001d020332_P001	Maize	cytosol	26.72	25.64
Zm00001d021951_P001	Maize	plastid	16.72	24.09
Zm00001d006705_P001	Maize	plastid	16.12	23.28
Zm00001d035040_P007	Maize	mitochondrion	25.22	19.38
Zm00001d003967_P001	Maize	plastid	12.24	18.22
Zm00001d049708_P007	Maize	cytosol	23.58	17.91
Zm00001d042608_P002	Maize	cytosol	22.69	16.43

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103630485	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6M6J3	ProteinID:AQK86699.1
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF147	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002212C3C	InterPro:Ubox_domain
EnsemblPlantsGene:Zm00001d038471	EnsemblPlants:Zm00001d038471_P001	EnsemblPlants:Zm00001d038471_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

U-box domain-containing protein 16

Coordinates

chr6:+:157965104..157967206

Molecular Weight (calculated)

70943.5 Da

IEP (calculated)

7.236

GRAVY (calculated)

0.083

Length

670 amino acids

Sequence
(BLAST)

001: MMSDAWPSSP YSSSAPDGEV LRSLHRLARD LSAAEAPAPF LRPVFAAVAR RARLLAAVFD DLLLCGAAAG PLLLLLLPRS ASLCLRELLL VLQRFKALVA
101: DCATRSRTRL LLQSDEVAAR ARELQHDLAT LIDLLPAAEL GLADDVSDLL ALASRQCRRA AAPELELKAG VLALIQEVER EIVPERERLE GILEDVGIND
201: PASCSDEIET LEREIGDRVA ERWTSSMIAL VGLLRYAKCV LFSAATPRPV DSKVDLDDAE PPSPPPDFRC PISLELMGDP VVASSGQTYD RDSITRWFGS
301: GKSTCPKTGQ VLLNLELVPN KALKNLISRW CRENGIPMES SESGKAEPAP AVGANKAALK AARMTASFLV KKLSASFSPE ATKRVVQEIR QLAKSGSDNR
401: AFIGEAGAAG LLVPLLLSED SALQLNAVTA LLNLSILEAN KKRIMHAEGA VDALCHVMGT GATWRAKENA AATVLSLAAV HAYRRRLGRN PRVVESVVRL
501: ARTGPSSTKK DALAALLCLS AERENVPRIV EAGAAEAALA AVGEAEAEAA AAVLASLAKR GGAEAIVALD GAVARLVNEM RRGTEWSREC AAAALVLLCR
601: RAGAAAASQV VAVQGVEWAI WELLGTGTER ARRKAASLGR ACRRWAAAAN AEQSTECPAA ADAPALTSAA

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.