CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76105	Soybean	cytosol, plastid	88.93	61.82
PGSC0003DMT400071349	Potato	plastid	58.81	41.47
Solyc09g018230.1.1	Tomato	plastid	58.4	41.42
VIT_08s0058g01100.t01	Wine grape	plastid	57.38	41.36
AT5G01830.1	Thale cress	plastid	51.84	37.54
CDY31406	Canola	cytosol	50.61	36.65
CDX71307	Canola	cytosol	50.41	36.55
Bra001998.1-P	Field mustard	cytosol	44.67	36.52
Bra019022.1-P	Field mustard	cytosol	50.41	36.5
TraesCS1A01G300000.1	Wheat	cytosol	40.78	29.79
TraesCS1B01G310100.1	Wheat	plastid	40.78	29.53
GSMUA_Achr8P25140_001	Banana	plastid	25.41	29.52
TraesCS1D01G299400.1	Wheat	cytosol, plastid	40.16	29.39
GSMUA_Achr7P22130_001	Banana	cytosol	38.11	29.38
OQU78182	Sorghum	plastid	40.78	29.31
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	39.96	29.1
HORVU1Hr1G069990.1	Barley	plastid	40.37	28.89
Os05t0476700-01	Rice	plastid	39.96	28.8
GSMUA_Achr4P00200_001	Banana	plastid	41.39	28.69
Zm00001d012494_P001	Maize	cytosol	38.93	28.66
Zm00001d043043_P001	Maize	cytosol	38.32	28.21
TraesCS3A01G345800.1	Wheat	plastid	39.34	28.11
TraesCS3B01G377600.1	Wheat	plastid	39.34	27.95
Os01t0823900-01	Rice	plastid	38.93	27.94
HORVU3Hr1G081300.1	Barley	plastid	39.34	27.91
TraesCS3D01G339600.1	Wheat	plastid	39.34	27.87
KXG33626	Sorghum	plastid	39.34	27.35
KRH73275	Soybean	cytosol	28.07	26.92
KRH21208	Soybean	mitochondrion	39.14	26.68
KRH11061	Soybean	mitochondrion, plastid	38.52	26.26
KRH59027	Soybean	mitochondrion	37.5	25.59
KRH42917	Soybean	mitochondrion	36.27	24.76
KRG91959	Soybean	cytosol	30.33	23.45
KRH34817	Soybean	cytosol	30.33	23.42
KRH50347	Soybean	nucleus	29.92	22.32
KRG89279	Soybean	cytosol	29.51	22.12
KRH29807	Soybean	cytosol	29.1	21.48
KRH24807	Soybean	cytosol	29.1	21.45
KRH03317	Soybean	cytosol, plastid	29.3	21.15
KRH69547	Soybean	cytosol, plastid	29.71	20.34
KRH54418	Soybean	cytosol, plastid	27.66	19.77
KRG99865	Soybean	cytosol	24.8	19.61
KRH00831	Soybean	cytosol	25.41	19.53
KRH40395	Soybean	cytosol	24.59	18.9
KRG97080	Soybean	cytosol, nucleus	16.8	18.64
KRH04403	Soybean	mitochondrion	13.73	18.51
KRH68828	Soybean	cytosol	16.19	18.37
KRH46608	Soybean	cytosol	16.8	17.79
KRG99581	Soybean	cytosol	16.19	17.14
KRG92593	Soybean	cytosol	15.16	16.7
KRH33490	Soybean	cytosol	17.83	16.57
KRH32190	Soybean	cytosol	21.93	16.14
KRH72794	Soybean	plasma membrane	24.39	14.64
KRH30135	Soybean	cytosol	24.8	14.44
KRG98177	Soybean	cytosol	24.39	14.15
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.7	12.41
KRH15451	Soybean	cytosol	6.56	11.81
KRH67390	Soybean	cytosol, plastid	20.7	11.8
KRH36562	Soybean	plastid	10.66	11.35
KRH17146	Soybean	cytosol	5.53	11.34
KRH52088	Soybean	cytosol	7.58	11.31
KRH51173	Soybean	cytosol	9.63	10.98
KRH11541	Soybean	plastid	10.25	10.94
KRH05594	Soybean	cytosol	7.58	10.51
KRH01984	Soybean	cytosol	9.02	10.35

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02001355	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlantsGene:GLYMA_03G036700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	UniProt:I1JKY6	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlants:KRH65448	ProteinID:KRH65448	ProteinID:KRH65448.1	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00023BBFE3	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:

Description

hypothetical protein

Coordinates

chr3:-:4440551..4443406

Molecular Weight (calculated)

53953.0 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.086

Length

488 amino acids

Sequence
(BLAST)

001: MALSPETFTT RKRRPRGSSF TSPKVNDLNV LSSLLQLTDQ ICSLNLTATL LNRVSSSTIR KTQLLGVVFE ELFRVSNLNS DSVLFLCLEE MYIVLHKLKT
101: LIQDFSNGSK FNLLMQIDTV AESFHRLTGE LSTLLDVFPL QDLDLNDDVR ELVLLVRKQC SEAKAFIGAE HVSLRNDVVL VLDRIKNEIV PDQAHLASIF
201: EKLEIRDASS CRAEIESLEE EIHNRCEEQP KTDLVALIGL VRFAKCVLYG ASTPSQKTVT LRRNQSSELA IPADYRCPIS LELMRDPVVV ATGQTYDRVS
301: IKLWMDSGHN TCPKTGQTLS HSDLIPNRVL RNMITAWCRE QRIPFEAETD TGKLNGGVTN KAALEATRMT VSFLINKLKG RENDNVNVPL SVEDTNGVVY
401: ELRVLAKTDS DSRACIAEAG AIPVLVRFLN AENPSLQVNA VTTILNMSIL EANKTKIMET DGALNGIAEV LISGAHVGGQ GERGSDGV

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.