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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
 nucleus: 24385303
msms PMID: 24385303 doi
S Komatsu, S Hiraga, MZ Nouri
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH24392
KRH29374
KRH51475
KRH60786

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G71020.1 KRH24392 AT4G39050.1 21798944
AT1G71020.1 KRH29374 AT4G39050.1 21798944
AT1G71020.1 KRH51475 AT4G39050.1 21798944
AT1G71020.1 KRH60786 AT4G39050.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG89279 Soybean cytosol 94.5 94.93
VIT_01s0011g04770.t01 Wine grape cytosol 67.74 69.33
CDY25764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 58.56 65.14
PGSC0003DMT400015349 Potato cytosol 64.22 64.92
Bra012355.1-P Field mustard plasma membrane 57.95 64.46
Solyc04g007640.2.1 Tomato cytosol 63.46 64.14
CDY12497 Canola cytosol 58.26 63.82
CDY04746 Canola cytosol, endoplasmic reticulum 59.33 63.71
CDY21412 Canola cytosol, endoplasmic reticulum 59.17 63.65
AT1G23030.1 Thale cress cytosol 59.48 63.56
Bra024559.1-P Field mustard cytosol, plasma membrane 59.17 63.55
AT1G71020.1 Thale cress cytosol 60.24 62.74
PGSC0003DMT400078473 Potato cytosol 61.01 61.38
Bra016165.1-P Field mustard cytosol, plasma membrane 57.8 61.36
CDX96295 Canola cytosol, plasma membrane 57.65 61.2
Solyc05g008230.2.1 Tomato cytosol 60.09 60.46
CDX72769 Canola cytosol 56.42 60.29
CDY04747 Canola cytosol, golgi 40.37 59.86
KRH04403 Soybean mitochondrion 29.97 54.14
EES07310 Sorghum cytosol 51.99 53.29
Zm00001d000381_P001 Maize cytosol 51.53 52.82
Os02t0732200-01 Rice cytosol 51.38 52.75
TraesCS6D01G274500.1 Wheat cytosol 51.68 52.73
TraesCS6A01G293600.1 Wheat cytosol 51.53 52.57
TraesCS6B01G324000.1 Wheat cytosol 51.68 52.57
KRH17146 Soybean cytosol 17.13 47.06
GSMUA_Achr9P15600_001 Banana cytosol 48.62 47.04
KRH34817 Soybean cytosol 44.8 46.36
KRG91959 Soybean cytosol 44.5 46.12
HORVU6Hr1G073280.1 Barley cytosol 51.99 42.34
KRH29807 Soybean cytosol 42.66 42.21
KRH24807 Soybean cytosol 42.66 42.15
KRH15451 Soybean cytosol 17.28 41.7
KRG99865 Soybean cytosol 36.85 39.06
KRH68828 Soybean cytosol 24.92 37.91
KRH52088 Soybean cytosol 18.81 37.61
KRH40395 Soybean cytosol 35.93 37.01
KRH00831 Soybean cytosol 35.78 36.85
KRG97080 Soybean cytosol, nucleus 24.31 36.14
KRG92593 Soybean cytosol 23.55 34.76
KRH05594 Soybean cytosol 18.65 34.66
KRG99581 Soybean cytosol 24.31 34.49
KRH46608 Soybean cytosol 24.31 34.49
KRH73275 Soybean cytosol 25.08 32.22
KRH33490 Soybean cytosol 25.84 32.19
KRH65448 Soybean plastid 22.32 29.92
KRH21208 Soybean mitochondrion 32.42 29.61
KRH11061 Soybean mitochondrion, plastid 32.42 29.61
KRH51173 Soybean cytosol 19.11 29.21
KRH36562 Soybean plastid 20.18 28.82
KRH01984 Soybean cytosol 18.65 28.71
KRH11541 Soybean plastid 20.03 28.67
KRH76105 Soybean cytosol, plastid 30.12 28.06
KRH59027 Soybean mitochondrion 29.97 27.41
KRH42917 Soybean mitochondrion 29.97 27.41
KRH03317 Soybean cytosol, plastid 26.61 25.74
KRH72794 Soybean plasma membrane 31.65 25.46
KRH30135 Soybean cytosol 32.26 25.18
KRG98177 Soybean cytosol 31.65 24.61
KRH54418 Soybean cytosol, plastid 25.54 24.45
KRH69547 Soybean cytosol, plastid 25.84 23.7
KRG95672 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 29.36 23.59
KRH67390 Soybean cytosol, plastid 28.75 21.96
KRH32190 Soybean cytosol 20.18 19.91
Protein Annotations
Gene3D:1.25.10.10Gene3D:1.25.10.110EntrezGene:100815448MapMan:19.2.2.1.5.2.1Gene3D:3.30.40.10EMBL:ACUP02004684
InterPro:ARM-likeInterPro:ARM-type_foldInterPro:Armadilloncoils:CoilEnsemblPlantsGene:GLYMA_07G216200GO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006464GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538UniProt:I1KM32InterPro:IPR000225
InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083EnsemblPlants:KRH50347ProteinID:KRH50347ProteinID:KRH50347.1
PFAM:PF00514PFAM:PF04564PFscan:PS50176PFscan:PS51698PANTHER:PTHR23315PANTHER:PTHR23315:SF52
SMART:SM00185SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850UniParc:UPI0001CAA092InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
hypothetical protein
Coordinates
chr7:+:38874775..38878137
Molecular Weight (calculated)
71518.2 Da
IEP (calculated)
7.413
GRAVY (calculated)
-0.137
Length
654 amino acids
Sequence
(BLAST)
001: MAGDDLAGDH TPELLCLVHE IAGMCSAGSS SGADAMFRKD CTDLVRRISL LTHLFEEIKE LKNNNDVGGS ASSSSSYSSS SSSASSKWSS DLVLALHSAR
101: RLLSVARNFR SYCSSDGAAK TIVFQFQCVT WKLEKLLSNL PYDDLDISEE VKEQVDLVRT QLRRATDKYG FMISKMPSHE LSQPLAEEIS QVLGKSVSRL
201: HKQHSCPENL SELDSIPINY EEKRCSKNPA GTRLERTRSI PTEVEVSLNA TDPESQEISE TKILPEVKKP EAIVIPEDFL CPISLELMRD PVIVATGQTY
301: ERSYIQRWID CGNTTCPKTQ QKLQHLTLTP NYVLRSLISQ WCIEHNIEQP TGLTNGKLKK SDGSFRDVTG DIAAIEALVR KLSCRSVEER RAAVTELRSL
401: SKRSTDNRIL IAEAGAIPVL VNLLTSEDVL TQDNAVTSIL NLSIYENNKG LIMLAGAIPS IVQVLRAGTM EARENAAATL FSLSLADENK IIIGASGAIP
501: ALVELLQNGS PRGKKDAATA LFNLCIYQGN KGRAIRAGII TALLKMLTDS SKSMVDEALT IMSVLASHQE AKVAIVKAST IPVLIDLLRT GLPRNKENAA
601: AILLALCKRD ADNLACISRL GVVIPLSELA RNGTERAKRK ATSLLEHIRK LQQL
Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)
001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ
Arabidopsis Description
PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.