CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24392
KRH29374
KRH51475
KRH60786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	KRH24392	AT4G39050.1	21798944
AT1G71020.1	KRH29374	AT4G39050.1	21798944
AT1G71020.1	KRH51475	AT4G39050.1	21798944
AT1G71020.1	KRH60786	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50347	Soybean	nucleus	94.93	94.5
VIT_01s0011g04770.t01	Wine grape	cytosol	68.05	69.33
PGSC0003DMT400015349	Potato	cytosol	64.36	64.76
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	58.22	64.46
Solyc04g007640.2.1	Tomato	cytosol	63.75	64.14
Bra012355.1-P	Field mustard	plasma membrane	57.6	63.78
AT1G23030.1	Thale cress	cytosol	59.91	63.73
CDY04746	Canola	cytosol, endoplasmic reticulum	59.29	63.38
CDY21412	Canola	cytosol, endoplasmic reticulum	59.14	63.32
Bra024559.1-P	Field mustard	cytosol, plasma membrane	59.14	63.22
CDY12497	Canola	cytosol	57.91	63.15
AT1G71020.1	Thale cress	cytosol	60.22	62.42
PGSC0003DMT400078473	Potato	cytosol	60.68	60.77
Bra016165.1-P	Field mustard	cytosol, plasma membrane	57.45	60.71
CDX96295	Canola	cytosol, plasma membrane	57.3	60.55
Solyc05g008230.2.1	Tomato	cytosol	59.75	59.85
CDX72769	Canola	cytosol	56.07	59.64
CDY04747	Canola	cytosol, golgi	40.25	59.41
KRH04403	Soybean	mitochondrion	30.26	54.42
EES07310	Sorghum	cytosol	52.53	53.6
Zm00001d000381_P001	Maize	cytosol	52.23	53.29
Os02t0732200-01	Rice	cytosol	51.92	53.06
TraesCS6D01G274500.1	Wheat	cytosol	51.92	52.73
TraesCS6A01G293600.1	Wheat	cytosol	51.77	52.57
TraesCS6B01G324000.1	Wheat	cytosol	51.92	52.57
GSMUA_Achr9P15600_001	Banana	cytosol	49.0	47.19
KRH17146	Soybean	cytosol	17.2	47.06
KRH34817	Soybean	cytosol	45.16	46.52
KRG91959	Soybean	cytosol	44.85	46.28
KRH29807	Soybean	cytosol	43.16	42.51
KRH24807	Soybean	cytosol	43.16	42.45
KRH15451	Soybean	cytosol	17.67	42.44
HORVU6Hr1G073280.1	Barley	cytosol	52.23	42.34
KRG99865	Soybean	cytosol	37.17	39.22
KRH52088	Soybean	cytosol	19.51	38.84
KRH68828	Soybean	cytosol	24.88	37.67
KRH40395	Soybean	cytosol	36.56	37.48
KRH00831	Soybean	cytosol	36.41	37.32
KRG97080	Soybean	cytosol, nucleus	24.27	35.91
KRH05594	Soybean	cytosol	19.2	35.51
KRG92593	Soybean	cytosol	23.81	34.99
KRG99581	Soybean	cytosol	24.58	34.71
KRH46608	Soybean	cytosol	24.42	34.49
KRH33490	Soybean	cytosol	26.42	32.76
KRH73275	Soybean	cytosol	25.04	32.02
KRH11061	Soybean	mitochondrion, plastid	32.87	29.89
KRH21208	Soybean	mitochondrion	32.87	29.89
KRH65448	Soybean	plastid	22.12	29.51
KRH51173	Soybean	cytosol	19.35	29.44
KRH36562	Soybean	plastid	20.43	29.04
KRH01984	Soybean	cytosol	18.89	28.94
KRH11541	Soybean	plastid	20.28	28.88
KRH59027	Soybean	mitochondrion	30.88	28.11
KRH42917	Soybean	mitochondrion	30.88	28.11
KRH76105	Soybean	cytosol, plastid	29.8	27.64
KRH03317	Soybean	cytosol, plastid	26.73	25.74
KRH72794	Soybean	plasma membrane	31.64	25.34
KRH30135	Soybean	cytosol	31.95	24.82
KRG98177	Soybean	cytosol	31.8	24.61
KRH54418	Soybean	cytosol, plastid	25.65	24.45
KRH69547	Soybean	cytosol, plastid	26.27	23.98
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.34	23.46
KRH67390	Soybean	cytosol, plastid	29.19	22.2
KRH32190	Soybean	cytosol	20.28	19.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	EntrezGene:100811123	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:ACUP02012194
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G013200	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1ND65	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRG89279	ProteinID:KRG89279	ProteinID:KRG89279.1
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52
SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000233DBD9	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:1155844..1159164

Molecular Weight (calculated)

70955.6 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.105

Length

651 amino acids

Sequence
(BLAST)

001: MAGEELAGDH TPELLCLVHD IAGMCSALSS SAGSAGAMFR KDCTDLVRRI SLLTHLFEEI KELSNNVVGG SSSSPSPSSS ASSKWSSDLV LALHSARRLL
101: SVARNFRSNC SSDGAAKTIV FQFQCVTWKL EKLLSNLPYD DLDISEEVKE QVDLVRTQLR RATDKYGFMI SKMPSHELSQ PLAEEISQVL GKSVSRLHKQ
201: QSCPENLSEL DSIPINNEGK CCSTNPARSR LERTRSIPTE VEVSLNATEP ESQEISETKS LPEVKKTEGI VIPEDFLCPI SLELMRDPVI VATGQTYERS
301: YIQRWIDCGN TTCPKTQQKL QHLTLTPNYV LRSLISQWCI EHNIEQPTGL TNGKLKKSDG SFRDVTGDIA AIEALVWKLS SRSVEERRSA VTEIRLLSKR
401: STDNRILIAE AGAIPVLVNL LTSEDVLTQD NAVTSILNLS IYENNKGLIM LAGAIPSIVQ VLRAGTMEAR ENAAATLFSL SLADENKIII GASGAIPALV
501: ELLQNGSPRG KKDAATALFN LCIYQGNKGR AIRAGIITAL LKMLTDSSKS MVDEALTIMS VLASHQEAKV AIVKASTIPV LIDLLRTGLP RNKENAAAIL
601: LALCKRDADN LACISRLGAL IPLSELARNG TERAKRKATS LLEHIHKLQQ L

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.