CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	KRG89812	AT2G41100.1	17360592
AT1G29340.1	KRG94975	AT2G41100.1	17360592
AT1G29340.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11061	Soybean	mitochondrion, plastid	95.39	95.39
KRH59027	Soybean	mitochondrion	80.17	80.28
KRH42917	Soybean	mitochondrion	78.91	79.02
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	76.82	75.97
PGSC0003DMT400073254	Potato	cytosol	76.4	75.55
VIT_10s0003g01730.t01	Wine grape	mitochondrion	73.6	72.59
AT1G29340.1	Thale cress	plastid	71.37	70.1
CDX90186	Canola	mitochondrion	69.55	69.85
CDY43332	Canola	mitochondrion	69.69	69.4
Bra010834.1-P	Field mustard	mitochondrion	69.55	69.26
CDX94661	Canola	plastid	67.6	68.07
Bra032309.1-P	Field mustard	plastid	65.64	66.76
CDY48332	Canola	mitochondrion, plastid	65.36	66.48
CDX99816	Canola	plastid	66.34	65.61
CDY37666	Canola	cytosol, plastid	52.51	56.88
CDY43686	Canola	plastid	51.68	55.98
Bra021899.1-P	Field mustard	plastid	51.68	55.98
GSMUA_Achr2P15530_001	Banana	mitochondrion	51.12	55.45
GSMUA_Achr7P09440_001	Banana	mitochondrion	48.6	54.55
TraesCS6B01G222200.1	Wheat	cytosol	31.84	54.42
GSMUA_Achr9P28820_001	Banana	mitochondrion	44.83	53.59
GSMUA_Achr10P...	Banana	mitochondrion	32.96	52.21
Os02t0234300-01	Rice	cytosol	40.22	49.57
Zm00001d016225_P001	Maize	plastid	47.49	46.64
Zm00001d053544_P001	Maize	mitochondrion, plastid	45.67	46.38
EES04812	Sorghum	plastid	46.93	46.09
TraesCS6A01G190700.1	Wheat	plastid	45.81	45.24
TraesCS6D01G180400.1	Wheat	plastid	45.81	45.24
KRH17146	Soybean	cytosol	13.27	39.92
HORVU6Hr1G041430.8	Barley	mitochondrion	45.81	39.81
KRH65448	Soybean	plastid	26.68	39.14
KRH04403	Soybean	mitochondrion	18.85	37.29
KRH73275	Soybean	cytosol	25.98	36.54
KRH76105	Soybean	cytosol, plastid	35.2	35.9
KRH34817	Soybean	cytosol	31.15	35.28
KRH15451	Soybean	cytosol	13.27	35.06
KRG91959	Soybean	cytosol	30.87	35.02
KRH29807	Soybean	cytosol	31.15	33.74
KRH68828	Soybean	cytosol	20.25	33.72
KRH24807	Soybean	cytosol	31.15	33.69
KRG97080	Soybean	cytosol, nucleus	20.53	33.41
KRH03317	Soybean	cytosol, plastid	31.42	33.28
KRG89279	Soybean	cytosol	29.89	32.87
KRH50347	Soybean	nucleus	29.61	32.42
KRH00831	Soybean	cytosol	28.63	32.28
KRH40395	Soybean	cytosol	28.07	31.65
KRH54418	Soybean	cytosol, plastid	29.19	30.6
KRG99865	Soybean	cytosol	26.26	30.47
KRH05594	Soybean	cytosol	14.94	30.4
KRG92593	Soybean	cytosol	18.72	30.25
KRH69547	Soybean	cytosol, plastid	29.89	30.01
KRH52088	Soybean	cytosol	13.69	29.97
KRH46608	Soybean	cytosol	18.85	29.28
KRG99581	Soybean	cytosol	18.58	28.85
KRH33490	Soybean	cytosol	20.95	28.57
KRH01984	Soybean	cytosol	15.92	26.82
KRH51173	Soybean	cytosol	15.92	26.64
KRH11541	Soybean	plastid	16.2	25.38
KRH36562	Soybean	plastid	16.06	25.11
KRH72794	Soybean	plasma membrane	26.82	23.62
KRH30135	Soybean	cytosol	27.09	23.15
KRG98177	Soybean	cytosol	26.68	22.71
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.3	21.38
KRH67390	Soybean	cytosol, plastid	24.44	20.44
KRH32190	Soybean	cytosol	17.6	19.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100811153	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02008347	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G225900	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	UniProt:I1M1P9	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH21208	ProteinID:KRH21208	ProteinID:KRH21208.1	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000233AC5F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:33839206..33842428

Molecular Weight (calculated)

78364.8 Da

IEP (calculated)

7.755

GRAVY (calculated)

0.005

Length

716 amino acids

Sequence
(BLAST)

001: MASGAIFSSL RRRRSPTLEA FLAPVDLSDV ALVQTLISVA NEIVSCFSKR SFFFQRKNSR SLIRKVEVFQ LLLEYLRDSQ SGSSCLPPTA VLCLKELYLL
101: LYRSKILLDY CAQSSKLWLL LQNHSISGHF HDLNQEISTL MDVFPVKDVL LSKDVREQVE LLQKQSRRAK LFIDMKDDAL RLRFFSFLDE FENGGIPDSA
201: ELGSFYVEKL QIVDAASCRT EIEGLEEQIV NHEGDIEPTI SVLNGLVAMT RYCRFLLFGF EEDELGFESG SQKKPKRRLI TQEIAETFLT VPKDFCCPIS
301: LDLMRDPVII STGQTYDRSS ISRWMEEGHT TCPKTGQMLA HTRLVPNRAL RNLIVKWCTA HGVPLEPPEV MDAMGEVFPS ACPTKAALEA NRATATLLIQ
401: QLAGGSQAGK TVAAREIRLL AKTGKENRAF IAEAGAIPYL RNLLSSRNAV AQENSVTALL NLSIFDKNKS RIMDEEGCLG SIVDVLRFGH TTEAKENAAA
501: TLFSLSAVHD YKKIIADEMR AVEALAGLLQ EGTPRGKKDA VTALFNLSTH TENCVRMIEA GAVTALVSAL GNEGVSEEAA GALALIVRQP IGAKAVVNEE
601: SAVAGLIGMM RCGTPRGKEN AVAAMLELCR SGGAAATERV VKAPALARLL QTLLFTGTKR ARRKAASLAR VFQRCEHATL HYGGLGVGYA FASNSNTTRD
701: TSFAGDVSVP MSISVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.