Factsheet for GSMUA_Achr10P27710_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT1G29340.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09440_001	Banana	mitochondrion	77.88	55.17
GSMUA_Achr2P15530_001	Banana	mitochondrion	73.23	50.15
GSMUA_Achr9P28820_001	Banana	mitochondrion	63.27	47.75
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	52.88	33.01
KRH21208	Soybean	mitochondrion	52.21	32.96
PGSC0003DMT400073254	Potato	cytosol	52.65	32.87
AT1G29340.1	Thale cress	plastid	52.88	32.78
KRH11061	Soybean	mitochondrion, plastid	51.77	32.68
KRH59027	Soybean	mitochondrion	51.55	32.59
CDY43332	Canola	mitochondrion	51.77	32.55
VIT_10s0003g01730.t01	Wine grape	mitochondrion	52.21	32.51
CDX90186	Canola	mitochondrion	50.44	31.98
KRH42917	Soybean	mitochondrion	50.44	31.89
Bra010834.1-P	Field mustard	mitochondrion	50.66	31.85
Zm00001d016225_P001	Maize	plastid	51.11	31.69
EES04812	Sorghum	plastid	50.88	31.55
CDX94661	Canola	plastid	49.34	31.36
CDY48332	Canola	mitochondrion, plastid	48.67	31.25
CDX99816	Canola	plastid	50.0	31.22
Bra032309.1-P	Field mustard	plastid	48.45	31.11
Zm00001d053544_P001	Maize	mitochondrion, plastid	48.45	31.06
TraesCS6A01G190700.1	Wheat	plastid	49.34	30.76
TraesCS6D01G180400.1	Wheat	plastid	49.34	30.76
Os02t0234300-01	Rice	cytosol	37.83	29.43
CDY37666	Canola	cytosol, plastid	41.15	28.14
CDY43686	Canola	plastid	41.15	28.14
Bra021899.1-P	Field mustard	plastid	40.93	27.99
HORVU6Hr1G041430.8	Barley	mitochondrion	49.12	26.94
GSMUA_Achr7P22130_001	Banana	cytosol	36.73	26.22
TraesCS6B01G222200.1	Wheat	cytosol	23.23	25.06
GSMUA_Achr4P00200_001	Banana	plastid	36.06	23.15
GSMUA_Achr8P25140_001	Banana	plastid	20.13	21.67
GSMUA_Achr3P00280_001	Banana	cytosol	28.76	21.56
GSMUA_Achr5P28670_001	Banana	cytosol	26.33	20.88
GSMUA_Achr1P24290_001	Banana	cytosol	27.65	20.46
GSMUA_Achr4P05030_001	Banana	cytosol	23.01	19.85
GSMUA_Achr4P04900_001	Banana	cytosol	23.01	19.7
GSMUA_Achr10P...	Banana	cytosol	26.99	19.49
GSMUA_Achr5P07140_001	Banana	cytosol	26.99	19.43
GSMUA_Achr6P34170_001	Banana	cytosol	28.32	19.28
GSMUA_Achr9P14560_001	Banana	cytosol	22.57	17.44
GSMUA_Achr9P01670_001	Banana	cytosol	16.81	16.31
GSMUA_Achr9P15600_001	Banana	cytosol	24.34	16.27
GSMUA_Achr4P01530_001	Banana	plasma membrane	20.8	15.38
GSMUA_Achr3P06160_001	Banana	plastid	18.58	14.81
GSMUA_Achr10P...	Banana	cytosol	27.43	14.35
GSMUA_Achr6P36530_001	Banana	cytosol	20.58	14.09
GSMUA_Achr6P06560_001	Banana	cytosol	11.5	13.94
GSMUA_Achr10P...	Banana	cytosol	11.28	13.64
GSMUA_Achr5P21360_001	Banana	cytosol	19.03	11.33
GSMUA_Achr6P07710_001	Banana	cytosol	8.19	10.36
GSMUA_Achr3P18890_001	Banana	cytosol	7.52	9.47
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	8.63	9.42
GSMUA_Achr10P...	Banana	cytosol	7.74	9.41
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	8.41	9.36
GSMUA_Achr9P12570_001	Banana	cytosol	6.19	9.33
GSMUA_Achr4P14130_001	Banana	cytosol	6.42	8.36
GSMUA_Achr4P03430_001	Banana	cytosol	4.87	8.18
GSMUA_Achr5P16030_001	Banana	cytosol	8.41	8.07
GSMUA_Achr4P11070_001	Banana	cytosol	6.64	7.11
GSMUA_Achr3P29830_001	Banana	cytosol	6.42	6.97
GSMUA_Achr1P22790_001	Banana	mitochondrion	6.86	6.84
GSMUA_Achr4P06990_001	Banana	plastid	5.97	6.7

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016765	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G27710_001	EnsemblPlants:GSMUA_Achr10P27710_001	EnsemblPlants:GSMUA_Achr10T27710_001	InterPro:IPR003613
InterPro:IPR013083	UniProt:M0RLZ5	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76
SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI0002963F00	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative U-box domain-containing protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr10G27710_001]

Coordinates

chr10:-:30760030..30761828

Molecular Weight (calculated)

50072.5 Da

IEP (calculated)

6.124

GRAVY (calculated)

-0.147

Length

452 amino acids

Sequence
(BLAST)

001: MTSPFAFLSF RRRRSPLSGA YFVPGDLSSA ALFHALAALS ADVARHSSLS QCRNARSLVR RIRILAVLFE FLEESFASSP SSPLPPWFPA SAALCFRELY
101: IFVYRTKLLL DYCSQSSRLW LLLRNPQISG NFHDLTQELA TVLDVLPLDD LRLAADVREQ IELLRRECRR SKLFVDPDDE ELCRKIFFFL GQFETGEAPD
201: PAELRDTFVH RLGIRDVRAC RTEIEFLEGQ ISNQEEDMDL PLVSGVIALT RYCSQGSGSF SLTIPKDFCC PISLDLMKDP VVVSTGQTYD RASITQWMEE
301: GHRTCPNSGL TLTNSRLVPN RALASLISQW CASYGIPYGT PEGAGIPAES TAAACASRAA IEANRATSRI LVQQLSAGSQ ESKTVAACEL RLLAKTGKEN
401: RHGLTNEARE NAAATLIGQF ADAGKLEREE RCSCRCSGIA HETPHFGTDS WE

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.