Factsheet for TraesCS6B01G222200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	TraesCS1A01G308700.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS1A01G308800.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS1B01G319300.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS1D01G308000.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS2B01G113800.2	AT2G41100.1	17360592
AT1G29340.1	TraesCS3A01G184500.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS3A01G191900.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS3A01G335000.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS3B01G219900.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS3B01G365900.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS3D01G188600.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS3D01G194500.2	AT2G41100.1	17360592
AT1G29340.1	TraesCS3D01G328300.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS4B01G131100.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS4D01G126100.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5A01G057100.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5A01G057200.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5A01G139700.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5B01G059900.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5B01G137100.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5D01G068000.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5D01G068100.1	AT2G41100.1	17360592
AT1G29340.1	TraesCS5D01G153400.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0234300-01	Rice	cytosol	87.11	62.82
TraesCS6D01G180400.1	Wheat	plastid	99.28	57.38
TraesCS6A01G190700.1	Wheat	plastid	98.81	57.1
EES04812	Sorghum	plastid	88.07	50.62
Zm00001d016225_P001	Maize	plastid	87.83	50.48
HORVU6Hr1G041430.8	Barley	mitochondrion	98.09	49.88
Zm00001d053544_P001	Maize	mitochondrion, plastid	81.38	48.37
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	21.96	36.22
GSMUA_Achr2P15530_001	Banana	mitochondrion	54.89	34.85
GSMUA_Achr9P28820_001	Banana	mitochondrion	47.73	33.39
GSMUA_Achr7P09440_001	Banana	mitochondrion	50.12	32.92
VIT_10s0003g01730.t01	Wine grape	mitochondrion	56.32	32.51
KRH11061	Soybean	mitochondrion, plastid	54.65	31.98
KRH21208	Soybean	mitochondrion	54.42	31.84
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	53.7	31.08
KRH42917	Soybean	mitochondrion	52.98	31.05
CDX90186	Canola	mitochondrion	52.74	31.0
CDX94661	Canola	plastid	52.51	30.94
PGSC0003DMT400073254	Potato	cytosol	53.46	30.94
KRH59027	Soybean	mitochondrion	52.74	30.91
Bra010834.1-P	Field mustard	mitochondrion	52.27	30.46
CDY43332	Canola	mitochondrion	52.27	30.46
Bra032309.1-P	Field mustard	plastid	51.07	30.4
CDY48332	Canola	mitochondrion, plastid	51.07	30.4
AT1G29340.1	Thale cress	plastid	52.51	30.18
CDX99816	Canola	plastid	51.31	29.7
TraesCS2B01G213900.1	Wheat	cytosol	22.43	26.04
TraesCS3B01G422200.1	Wheat	cytosol	26.73	25.34
CDY43686	Canola	plastid	39.62	25.11
Bra021899.1-P	Field mustard	plastid	39.62	25.11
CDY37666	Canola	cytosol, plastid	39.38	24.96
TraesCS2B01G294100.1	Wheat	nucleus	26.01	23.7
TraesCS2B01G216300.1	Wheat	plastid	25.78	23.58
GSMUA_Achr10P...	Banana	mitochondrion	25.06	23.23
TraesCS1B01G310100.1	Wheat	plastid	37.23	23.15
TraesCS6B01G324000.1	Wheat	cytosol	34.84	22.71
TraesCS3B01G377600.1	Wheat	plastid	36.52	22.27
TraesCS5B01G087500.1	Wheat	cytosol	35.08	21.55
TraesCS7B01G186600.1	Wheat	cytosol	30.79	20.03
TraesCS4B01G206900.1	Wheat	plastid	34.37	18.8
TraesCS7B01G473200.1	Wheat	cytosol	29.59	18.4
TraesCS3B01G443500.1	Wheat	cytosol	22.2	17.58
TraesCS3B01G591000.1	Wheat	cytosol	33.41	16.85
TraesCS2B01G499300.1	Wheat	plasma membrane	26.97	16.4
TraesCS5B01G197400.1	Wheat	cytosol, plasma membrane, plastid	26.97	16.12

Protein Annotations

Gene3D:1.25.10.10	Gene3D:1.25.10.110	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009814	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6B01G222200	EnsemblPlants:TraesCS6B01G222200.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr6B:-:320732983..320734242

Molecular Weight (calculated)

45011.8 Da

IEP (calculated)

9.738

GRAVY (calculated)

0.011

Length

419 amino acids

Sequence
(BLAST)

001: MRDPVVASTG QTYDRPSIIQ WIGEGHSTCP NSGQALADNR LVPNRALRSL ISQWCGLYCF QYDSPESNEG MAECVAAACS SKAAIEANKA TARILVRMLV
101: ESSDSSKAVA AKEIRLLAKA GKQNRAFIAE LGAIPLLCRL LLSSDQIAQE NAVTALLNLS IYEPNKTRIM EQEGCLWLIV SVLQNGWTTE ARENAAATLF
201: SLSVVHDYKK MIMNEPGALE KLACMLKKGS PRGRKDAVMA LFNLSTHAES SARMLESSAV VALIESLRND TVSEEAAGAL ALLMKQPSVV HLVGSSETVI
301: SSLVGLMRRG TPKGKENAVS ALYEICRRGG STLVRRVAKI PGLNTVIQNI MLTGTKRAKK KASLIVKMCQ RSQMPSAMSL GTSLRVVDHS LVGNSSLRRA
401: ASFGSGELSN PVSISVHVP

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.