Factsheet for Solyc02g072080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT1G29340.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT1G29340.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT1G29340.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT1G29340.1	Solyc12g099990.1.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073254	Potato	cytosol	98.07	98.07
KRH21208	Soybean	mitochondrion	75.97	76.82
KRH11061	Soybean	mitochondrion, plastid	75.97	76.82
KRH59027	Soybean	mitochondrion	70.72	71.61
VIT_10s0003g01730.t01	Wine grape	mitochondrion	71.27	71.07
KRH42917	Soybean	mitochondrion	69.61	70.49
AT1G29340.1	Thale cress	plastid	67.82	67.35
CDY43332	Canola	mitochondrion	66.57	67.04
CDX90186	Canola	mitochondrion	65.75	66.76
Bra010834.1-P	Field mustard	mitochondrion	65.75	66.2
CDX94661	Canola	plastid	64.09	65.26
Bra032309.1-P	Field mustard	plastid	62.98	64.77
CDY48332	Canola	mitochondrion, plastid	62.85	64.63
CDX99816	Canola	plastid	63.54	63.54
CDY37666	Canola	cytosol, plastid	49.86	54.61
Bra021899.1-P	Field mustard	plastid	49.72	54.46
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.59	54.39
GSMUA_Achr9P28820_001	Banana	mitochondrion	44.75	54.09
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.65	54.08
CDY43686	Canola	plastid	49.31	54.01
TraesCS6B01G222200.1	Wheat	cytosol	31.08	53.7
GSMUA_Achr10P...	Banana	mitochondrion	33.01	52.88
Os02t0234300-01	Rice	cytosol	39.5	49.23
Zm00001d053544_P001	Maize	mitochondrion, plastid	44.2	45.39
Zm00001d016225_P001	Maize	plastid	45.58	45.27
EES04812	Sorghum	plastid	45.3	44.99
TraesCS6D01G180400.1	Wheat	plastid	44.61	44.55
TraesCS6A01G190700.1	Wheat	plastid	44.48	44.41
HORVU6Hr1G041430.8	Barley	mitochondrion	44.48	39.08
Solyc09g018230.1.1	Tomato	plastid	35.64	37.5
Solyc11g008390.1.1	Tomato	cytosol	30.66	35.58
Solyc12g088360.1.1	Tomato	cytosol	13.26	34.91
Solyc06g051090.1.1	Tomato	cytosol	26.8	34.52
Solyc11g066040.1.1	Tomato	cytosol	31.22	34.09
Solyc06g076040.2.1	Tomato	cytosol	30.25	33.13
Solyc09g056450.2.1	Tomato	cytosol	20.44	32.96
Solyc12g094610.1.1	Tomato	cytosol	24.17	32.59
Solyc05g008230.2.1	Tomato	cytosol	28.73	32.0
Solyc04g007640.2.1	Tomato	cytosol	28.04	31.38
Solyc03g114160.1.1	Tomato	cytosol	29.28	31.09
Solyc04g082440.2.1	Tomato	cytosol	27.07	30.2
Solyc04g077850.2.1	Tomato	cytosol	14.78	30.06
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	27.76	29.34
Solyc04g050780.1.1	Tomato	cytosol	17.27	29.0
Solyc04g050770.1.1	Tomato	cytosol	16.85	27.54
Solyc11g012440.1.1	Tomato	cytosol, plastid	15.88	25.05
Solyc04g014810.2.1	Tomato	plastid	15.33	24.61
Solyc09g025270.2.1	Tomato	cytosol	24.86	24.03
Solyc01g014230.2.1	Tomato	cytosol	26.66	23.8
Solyc12g100000.1.1	Tomato	cytosol, plastid	26.38	23.32

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4B8I3	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc02g072080.1	EnsemblPlants:Solyc02g072080.1.1	UniParc:UPI00027691F2
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4B8I3]

Coordinates

chr2:-:41352040..41354214

Molecular Weight (calculated)

79260.0 Da

IEP (calculated)

8.142

GRAVY (calculated)

-0.001

Length

724 amino acids

Sequence
(BLAST)

001: MASAAIFSSL RRQRSPTLEA FLAPVDLTDV GLLQTLTALS SELISAYSGK RLPFYQRKNC KSLLRKIQVF SVLLECLLEN KKNRSSGSSD LPFTAFLCFK
101: ELYLLLYRSK ILLDYCSYSS KLWLLLQNHS ISGHFHDLNQ EISTLLDVFP LKDLKNLSED VREQVELLKK QARKSQLFVD KYDEMLRLKL FSFLNEFENG
201: GVPDYAQLYS FFVEKLGICN PRSCRVEIEF LEEQIVNHEG DIEPTSSVLN GFVALMRYCR FLLFGFEEDD MGLRLGKHKK PKRGLISQEI AETFISVPKD
301: FCCPISLDLM RDPVIVATGQ TYDRASISRW MEEGHCTCPK TGQLLDHTRL VPNRALRNLI MHWCAARKIP YDPLESGDPC VECFPSASPS RAALEANKAT
401: AALLIKQLES GTQIAKTIAA QEIRLLAKTG KENRAYIAEA GAIPHLKNLL SSPDAVAQEN SVTAMLNLSI FDKNKGRIID EVGCLALIVG VLRFGHTTEA
501: RENAAATLFS LSAVHDYKRQ IAKEDGAVEA LAGLLREGSP RGKKDAVTAL FNLSTHTDNC ARMIESGAVT ALVGALGSEG VAEEAAGALA LIVRQQVGAT
601: AVGNEEMAVA GLIAMMRCGT PRGKENAVAA LLELCRGGGA AATERVLKAP SLASLLQTLL FTGTKRARRK AASLARVFQR CEHAAVHYSG FGVGYAFAGN
701: SAAARDSTFP GDVSVSMSIS VPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.