Factsheet for Solyc11g008390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062230.1.1
Solyc02g078140.2.1
Solyc02g084010.1.1
Solyc03g006400.2.1
Solyc03g033590.1.1
Solyc03g113740.2.1
Solyc04g051660.2.1
Solyc05g007420.1.1
Solyc07g062080.2.1
Solyc09g064380.2.1
Solyc10g007500.2.1
Solyc11g008390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	Solyc09g064380.2.1	AT1G04130.1	21798944
AT3G54850.1	Solyc07g062080.2.1	AT1G53510.1	21798944
AT3G54850.1	Solyc10g007500.2.1	AT1G53510.1	21798944
AT3G54850.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT3G54850.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT3G54850.1	Solyc11g008390.1.1	AT3G54850.1	21798944
AT3G54850.1	Solyc02g062230.1.1	AT4G36110.1	21798944
AT3G54850.1	Solyc02g084010.1.1	AT4G36110.1	21798944
AT3G54850.1	Solyc03g033590.1.1	AT4G36110.1	21798944
AT3G54850.1	Solyc04g051660.2.1	AT4G39470.1	21798944
AT3G54850.1	Solyc02g078140.2.1	AT5G58950.1	21798944
AT3G54850.1	Solyc03g006400.2.1	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019235	Potato	cytosol	97.76	97.76
KRH04403	Soybean	mitochondrion	44.23	76.24
VIT_13s0019g04710.t01	Wine grape	cytosol	76.44	75.96
KRG91959	Soybean	cytosol	72.6	71.79
KRH34817	Soybean	cytosol	72.28	71.36
Bra007105.1-P	Field mustard	cytosol	65.71	64.67
AT3G54850.1	Thale cress	cytosol	65.22	64.4
CDX78273	Canola	cytosol	65.38	64.35
TraesCS7A01G001900.1	Wheat	cytosol	53.69	63.21
HORVU7Hr1G000780.1	Barley	cytosol	58.49	61.86
EER87680	Sorghum	cytosol	58.65	60.9
TraesCS7D01G001600.2	Wheat	cytosol, plastid	58.17	60.3
Os06t0102700-01	Rice	plasma membrane	58.01	59.93
GSMUA_Achr3P00280_001	Banana	cytosol	56.89	58.87
Zm00001d045632_P004	Maize	cytosol, mitochondrion	57.85	57.3
GSMUA_Achr1P24290_001	Banana	cytosol	55.29	56.46
TraesCS4A01G498700.1	Wheat	plastid	57.21	56.4
Solyc11g066040.1.1	Tomato	cytosol	56.89	53.54
Solyc06g076040.2.1	Tomato	cytosol	54.81	51.74
CDX73439	Canola	plastid	65.38	45.28
Solyc04g007640.2.1	Tomato	cytosol	45.83	44.2
Solyc12g088360.1.1	Tomato	cytosol	18.91	42.91
Solyc05g008230.2.1	Tomato	cytosol	44.23	42.46
Solyc12g094610.1.1	Tomato	cytosol	35.9	41.71
Solyc04g082440.2.1	Tomato	cytosol	41.83	40.22
Solyc09g056450.2.1	Tomato	cytosol	26.28	36.53
Solyc04g077850.2.1	Tomato	cytosol	20.51	35.96
Solyc06g051090.1.1	Tomato	cytosol	32.37	35.94
Solyc04g050780.1.1	Tomato	cytosol	21.63	31.32
Solyc04g050770.1.1	Tomato	cytosol	21.96	30.93
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	35.58	30.66
Solyc09g018230.1.1	Tomato	plastid	32.37	29.36
Solyc09g025270.2.1	Tomato	cytosol	34.94	29.11
Solyc04g014810.2.1	Tomato	plastid	20.83	28.82
Solyc11g012440.1.1	Tomato	cytosol, plastid	21.15	28.76
Solyc03g114160.1.1	Tomato	cytosol	31.41	28.74
Solyc12g100000.1.1	Tomato	cytosol, plastid	37.66	28.69
Solyc01g014230.2.1	Tomato	cytosol	36.22	27.87
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	29.17	26.57

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0004871
GO:GO:0005102	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	InterPro:IPR036537
UniProt:K4D599	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g008390.1
EnsemblPlants:Solyc11g008390.1.1	UniParc:UPI000276A8D2	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4D599]

Coordinates

chr11:-:2592403..2595079

Molecular Weight (calculated)

68025.1 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.188

Length

624 amino acids

Sequence
(BLAST)

001: MGHQKEELIN ELTELIDGVS GLPECRSVSK RMYSNLVRRV KLLSPLVEDL KDSDGVEVGD DVVHGLELLK IALISGLELL KSVNEGSKIL QALQIENISS
101: RFLDVTEQIE DALSHIPYNK LDLSEEVREQ IELVHAQFKR AKGKMESPDE QLEKDLAMAQ REQYPDPLIF KRLSEKLHLR TINDLKKESL AIHDMVISSG
201: GDPEECFETI AYLLRKLKDC AMTENPELDA LEGDKSLIKH RSPVIPDDFR CPISLELMKD PVIVSTGQTY ERSCIQKWLD AGHKTCPKTQ QTLLHTALTP
301: NYVLKSLIAL WCESNGVELP KNQGTCRNKR TGAGGSDCDR VAIDALLQKL ANGNSEQQRA AAGELRLLAK RNADNRVCIA GAGAIPLLVE LLSSSDSRTQ
401: EHAVTALLNL SINESNKGTI VNAGAIPDIV DVLRNGSMEA RENAAATLFS LSVVDENKVA IGAAGAIPAL IDLLCHGTPR GKKDAATAIF NLSIYQGNKV
501: RAVRAGIVPP LVRLLKDPGG GMMDEALAIL AILASHQEGK AAIAQSEPLP VLVQVIRTGS PRNRENAAAI LWSLCTGDVQ SLKIVRELGA EEVLKELSEN
601: GTDRAKRKAG SVLELLQRVD PVES

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.